Browse Element(s) Details


Os.52696.1.S1_at

Description gb:AK068796.1
DB_XREF= gi:32978821
TID=Os.52696.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013166D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013166D14, full insert sequence.
FL= gb:AK068796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0237010/11receptor-like kinase ARK1AS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02410Os.48023.1.A1_at8/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.33796.1.S1_x_at5/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.26617.2.S1_x_at4/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.7310.1.S1_at3/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.45516.2.S1_x_at2/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.12928.1.S1_at1/111+771211..776039Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52696.1.S1_at--392--10411Chr01:749439..749463 (25 bp)
TTTTGTGCCTGTTAGCGCTGCAAGG
LOC_Os01g02370
Os.52696.1.S1_at--388--7331Chr01:749216..749240 (25 bp)
GGTGAGGTGGTCACTGCCTTTAATA
LOC_Os01g02370
Os.52696.1.S1_at--488--7411Chr01:749086..749110 (25 bp)
GTGTTGATAGTCTGCAATTGCCTTC
LOC_Os01g02370
Os.52696.1.S1_at--540--111Chr01:749055..749079 (25 bp)
ATTCTTCTGTGATGACGAGCCTGTG
LOC_Os01g02370
Os.52696.1.S1_at--735--1671Chr01:749038..749062 (25 bp)
AGCCTGTGCCACATGTGGTGGGTTC
LOC_Os01g02370
Os.52696.1.S1_at--605--7731Chr01:749022..749046 (25 bp)
GGTGGGTTCTTACCATTTATCCTCT
LOC_Os01g02370
Os.52696.1.S1_at--185--4331Chr01:749010..749034 (25 bp)
CCATTTATCCTCTTGGCTAACTGAA
LOC_Os01g02370
Os.52696.1.S1_at--250--3612Chr01:748999..749023 (25 bp)
CTTGGCTAACTGAAATCTCGGAGGA
LOC_Os01g02370
Os.52696.1.S1_at--423--2351Chr01:748963..748987 (25 bp)
AAAGCTTGTGTCTGCTTGGAAGCAA
LOC_Os01g02370
Os.52696.1.S1_at--880--2531Chr01:748939..748963 (25 bp)
AACTCAGCTAACTATTTGCTTGTAA
LOC_Os01g02370
Os.52696.1.S1_at--648--2971Chr01:748882..748905 (24 bp)
AATGGTTATTGTACACTATTTATCC
NONE
Target Sequence 
TTTTGTGCCTGTTAGCGCTGCAAGGGGAACAATAGGTTATATTGCTCCTGAGATGATATCTCGGAGCTTTGGTGCCATAT
CTAGCAAATCTGACATGTATAGCTTTGGAATGCTTCTGTTGGAGATGGTTGGAGGGCGAAGGAACTCTAAGCAGGATATG
TCGAGCTCAAGCCAAGCGTATTATCCATCATGGGTGTATAATTAGCTGGTTCAACAAGAGTTGGGTGAGGTGGTCACTGC
CTTTAATATGCATGAGTTGGAAAAGAAGTTGTGCATTGTTGGGCTACATTGCATTCAGATGAAGTCTCATGATCGGCCAA
CAATGAGTGAGGTCATTGAGATGCTTGAAGGTGGTGTTGATAGTCTGCAATTGCCTTCTAGGCCATTCTTCTGTGATGAC
GAGCCTGTGCCACATGTGGTGGGTTCTTACCATTTATCCTCTTGGCTAACTGAAATCTCGGAGGAGGATGAGTGATAAAG
CTTGTGTCTGCTTGGAAGCAAACTCAGCTAACTATTTGCTTGTAAAACGCAGAAGCTAGAAATGATTGTAAACAGTGAAA
TGGTTATTGTACACTATTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis