Browse Element(s) Details


OsAffx.7310.1.S1_at

Description tigr:9639.m03250
TID=OsAffx.7310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3609011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g024103/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36070Os.18018.1.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.18018.2.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.22735.1.S1_at1/1111+20700399..20706011expressed protein
LOC_Os11g36090OsAffx.7310.1.S1_at11/1111+20709395..20714997Leucine Rich Repeat family protein, expressed
LOC_Os11g36100NANA11+20723486..20723908retrotransposon protein, putative, unclassified
LOC_Os11g36110OsAffx.8923.1.S1_at7/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.47999.3.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.51887.1.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36120OsAffx.7311.1.S1_at11/1111+20731323..20733951Leucine Rich Repeat family protein
LOC_Os11g36130OsAffx.19183.1.S1_at11/1111+20739476..20740428hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009621biological_processresponse to pathogenic fungi
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7310.1.S1_at--588--477Chr05:24280224..24280248 (25 bp)
ATCTGCTAGCTCAGGATGGTGGCCG
NONE
OsAffx.7310.1.S1_at--1043--9137Chr05:24280270..24280294 (25 bp)
TGCGGGCATGACTTCCACGAGGATT
NONE
OsAffx.7310.1.S1_at--333--3837Chr05:24280332..24280356 (25 bp)
CTGCCCAGTTCATTCTGCTTGTAAT
NONE
OsAffx.7310.1.S1_at--1143--4711Chr11:20709751..20709775 (25 bp)
GCTGGGAATACTGTGTCGACGCAAG
LOC_Os11g36090
OsAffx.7310.1.S1_at--769--2151Chr11:20709717..20709741 (25 bp)
ACAGCTACGGCATTCTTGTGTTGGA
LOC_Os11g36090
OsAffx.7310.1.S1_at--72--5331Chr11:20709680..20709704 (25 bp)
GAAGAGGCCCAGTGACAGCGAATTT
LOC_Os11g36090
OsAffx.7310.1.S1_at--1128--1671Chr11:20709643..20709667 (25 bp)
AGCCTCTGCGAGTCTGTAAGTCTGG
LOC_Os11g36090
OsAffx.7310.1.S1_at--225--2212Chr11:20740488..20740512 (25 bp)
ACAAGCTGTGTCTGGGCATTGATCA
NONE
OsAffx.7310.1.S1_at--435--4991Chr11:20709560..20709584 (25 bp)
GCATGATCCTGAGACAACCGATGAT
LOC_Os11g36090
OsAffx.7310.1.S1_at--933--6392Chr11:20740555..20740579 (25 bp)
GATCGATTGCCTGATTTCATTACTT
NONE
OsAffx.7310.1.S1_at--608--10451Chr11:20709495..20709519 (25 bp)
TTAGACTAGGACTTTCTTGCTCCCA
LOC_Os11g36090
Target Sequence 
ATCTGCTAGCTCAGGATGGTGGCCGGCGACTGTCCGCACGCTCTCCTGCGGGCATGACTTCCACGAGGATTGCAACATCG
CGAAGTGGCTCCGTGACAACAAGAAGGCCTGCCCAGTTCATTCTGCTTGTAATATTCAGTTGTATGAATATGGTGCTGGG
AATACTGTGTCGACGCAAGGTGATATTTACAGCTACGGCATTCTTGTGTTGGAAACTGTAACTGGGAAGAGGCCCAGTGA
CAGCGAATTTACACAAGGATTGAGCCTCTGCGAGTCTGTAAGTCTGGGTTTACATGGTAAAGTGATGGACATTGTTGACA
ACAAGCTGTGTCTGGGCATTGATCAGCATGATCCTGAGACAACCGATGATTTTTCAAGCAAGCAAAAGATCGATTGCCTG
ATTTCATTACTTAGACTAGGACTTTCTTGCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis