Browse Element(s) Details


Os.18018.1.S1_at

Description gb:AK099671.1
DB_XREF= gi:32984880
TID=Os.18018.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068G16, full insert sequence.
FL= gb:AK099671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3607011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36070Os.18018.1.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.18018.2.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.22735.1.S1_at1/1111+20700399..20706011expressed protein
LOC_Os11g36090OsAffx.7310.1.S1_at11/1111+20709395..20714997Leucine Rich Repeat family protein, expressed
LOC_Os11g36100NANA11+20723486..20723908retrotransposon protein, putative, unclassified
LOC_Os11g36110OsAffx.8923.1.S1_at7/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.47999.3.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.51887.1.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18018.1.S1_at--876--3151Chr11:20705456..20705480 (25 bp)
AATTCCCGATGATGTTTCTCGATAA
LOC_Os11g36070
Os.18018.1.S1_at--734--5951Chr11:20705535..20705559 (25 bp)
GAGAATTCTGTTATGGCCTTATGGG
LOC_Os11g36070
Os.18018.1.S1_at--487--2471Chr11:20705591..20705615 (25 bp)
AACACATGATCAGCTTGTTGGTGCT
LOC_Os11g36070
Os.18018.1.S1_at--603--9671Chr11:20705664..20705688 (25 bp)
TCACCAGATTTTCGAAGTTTCAGTC
LOC_Os11g36070
Os.18018.1.S1_at--663--6832Chr11:20705680..20705704 (25 bp)
GTTTCAGTCATCCTTCAGAGATTCT
LOC_Os11g36070
Os.18018.1.S1_at--277--1491Chr11:20705715..20705739 (25 bp)
AGCAACAGTTTGAGTATGGTCCCAG
LOC_Os11g36070
Os.18018.1.S1_at--772--7791Chr11:20705732..20705756 (25 bp)
GGTCCCAGACCAAGTTGTTGAATTT
LOC_Os11g36070
Os.18018.1.S1_at--420--3451Chr11:20705772..20705796 (25 bp)
CAGTTTGTCTGCTATTTGTTGAATT
LOC_Os11g36070
Os.18018.1.S1_at--883--3471Chr11:20705806..20705830 (25 bp)
CAGGTCAGCTTGTCTGCTATAGAGT
LOC_Os11g36070
Os.18018.1.S1_at--386--10531Chr11:20705891..20705915 (25 bp)
TTGATGTTTTACCTTTTCGATTGAT
LOC_Os11g36070
Os.18018.1.S1_at--683--7711Chr11:20705936..20705960 (25 bp)
GGTGACTTTGACCATTAACTTTTCA
LOC_Os11g36070
Target Sequence 
AATTCCCGATGATGTTTCTCGATAATGCAGATGCTGGGAATTGTACTTCATCATCTAAAATGTGCAATGTTGTTTTCATG
AGAATTCTGTTATGGCCTTATGGGGGGTTCTAGGTAGGTACAATCCTCATGACNAAACACATGATCAGCTTGTTGGTGCT
GATATCAGTGAATGAAGGAATTGCTATNNNNNNNNNNNNCAGATTTTAATGACATGAACNTCACCAGATTTTCGAAGTTT
CAGTCATCCTTCAGAGATTCTTCTGAGCAACAGCAACAGTTTGAGTATGGTCCCAGACCAAGTTGTTGAATTTCTTATGT
CGGCANATCAGTTTGTCTGCTATTTGTTGAATTTNATGTCGGCAGGTCAGCTTGTCTGCTATAGAGTTCAGTTTTGTTTG
GTATGGATTTAGCGTCTTGTAGATGCAAGATTGAACATAGTGATAATTTGATGTTTTACCTTTTCGATTGATGTTTTGAC
TAGAGTATTTGAGGTGACTTTGACCATTAACTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis