Browse Element(s) Details


Os.27270.2.S1_at

Description gb:AK121732.1
DB_XREF= gi:37991355
TID=Os.27270.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082H18, full insert sequence.
FL= gb:AK121732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3606011/11THUMP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36070Os.18018.1.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.18018.2.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.22735.1.S1_at1/1111+20700399..20706011expressed protein
LOC_Os11g36090OsAffx.7310.1.S1_at11/1111+20709395..20714997Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27270.2.S1_at--953--1551Chr11:20696159..20696178 (20 bp)
AGCTAAGACTATATGCATGATTGGG
LOC_Os11g36060
Os.27270.2.S1_at--862--2331Chr11:20696194..20696218 (25 bp)
AAAGAGCTCGCAAAGTTCAACTTAA
LOC_Os11g36060
Os.27270.2.S1_at--58--10511Chr11:20696209..20696233 (25 bp)
TTCAACTTAAGGCAGCTGACCTCAC
LOC_Os11g36060
Os.27270.2.S1_at--127--851Chr11:20696235..20696259 (25 bp)
ACCGGAGAAGTAGCCAATTGACCAG
LOC_Os11g36060
Os.27270.2.S1_at--76--6631Chr11:20696292..20696316 (25 bp)
GTTGGTTGAGCCGTGAAAATCACTA
LOC_Os11g36060
Os.27270.2.S1_at--240--6531Chr11:20696326..20696350 (25 bp)
GATTTCATTGTATCCATCAAAGCCT
LOC_Os11g36060
Os.27270.2.S1_at--807--5271Chr11:20696374..20696398 (25 bp)
GAATGTTTAACGCTTGACAGTGCAA
LOC_Os11g36060
Os.27270.2.S1_at--969--10491Chr11:20696411..20696435 (25 bp)
TTAATTATTACTGCCGCAGTCGGTC
LOC_Os11g36060
Os.27270.2.S1_at--1113--5011Chr11:20696426..20696450 (25 bp)
GCAGTCGGTCCAATAAATTTCGTCA
LOC_Os11g36060
Os.27270.2.S1_at--966--9831Chr11:20696439..20696463 (25 bp)
TAAATTTCGTCAAGGTTCTCGCTAT
LOC_Os11g36060
Os.27270.2.S1_at--250--291Chr11:20696491..20696515 (25 bp)
ATAGAATCTGTTTGGCTTGAAATCA
LOC_Os11g36060
Target Sequence 
AGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACAAAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCAC
CACCGGAGAAGTAGCCAATTGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATCA
CTATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACATGGAATGTTTAACGCTTGACAG
TGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGTCCAATAAATTTCGTCAAGGTTCTCGCTATNTAAATACAT
ACAGTGCATGTGGTACTATAGAATCTGTTTGGCTTGAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27270.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis