Browse Element(s) Details


Os.18023.1.S1_at

Description gb:AK064398.1
DB_XREF= gi:32974416
TID=Os.18023.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G10, full insert sequence.
FL= gb:AK064398.1 gb:AK103282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3603011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36000Os.52228.1.S1_at11/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36000OsAffx.31317.1.S1_at2/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36070Os.18018.1.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.18018.2.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.22735.1.S1_at1/1111+20700399..20706011expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18023.1.S1_at--459--8091Chr11:20677648..20677672 (25 bp)
GGAGCGAATCTGTCGTGACTTCTGA
LOC_Os11g36030
Os.18023.1.S1_at--473--7371Chr11:20677634..20677658 (25 bp)
GTGACTTCTGACTCTCAGGATTGTC
LOC_Os11g36030
Os.18023.1.S1_at--162--5691Chr11:20677598..20677622 (25 bp)
GACATTGGGTGTGCCACTCCATCTA
LOC_Os11g36030
Os.18023.1.S1_at--729--10691Chr11:20677522..20677546 (25 bp)
TTGCGAGCAGACTGAGGTCCCGTTC
LOC_Os11g36030
Os.18023.1.S1_at--475--431Chr11:20677476..20677500 (25 bp)
ATCTTATGGGCATGACCGTGCTGGT
LOC_Os11g36030
Os.18023.1.S1_at--588--7811Chr11:20677435..20677459 (25 bp)
GGTCATTACCTTTTGCGACGGACAG
LOC_Os11g36030
Os.18023.1.S1_at--173--6691Chr11:20677387..20677411 (25 bp)
GTTCCATGTCCGTGAAGTTTCTAGT
LOC_Os11g36030
Os.18023.1.S1_at--698--3691Chr11:20677319..20677343 (25 bp)
CTAGTGCCAACTCTTTTGCTTCAAA
LOC_Os11g36030
Os.18023.1.S1_at--1098--8851Chr11:20677291..20677315 (25 bp)
TGATGCCTATGTGCCTATGTCTAGT
LOC_Os11g36030
Os.18023.1.S1_at--17--8671Chr11:20677267..20677291 (25 bp)
TGTGGACTCCCTATTATTATGCTTT
LOC_Os11g36030
Os.18023.1.S1_at--148--8311Chr11:20677201..20677225 (25 bp)
GGCTATCATCGCAGCTAATGCTTTA
LOC_Os11g36030
Target Sequence 
GGAGCGAATCTGTCGTGACTTCTGACTCTCAGGATTGTCAAGTAAATCTGGACATTGGGTGTGCCACTCCATCTAAGCCG
ACGGGTCCAAAGAAGAGGAAGTGGATCGAACGAAGCCCNGACTGTGTTGCGAGCAGACTGAGGTCCCGTTCCAACAAATC
ATGAACAGCCTGATCTTATGGGCATGACCGTGCTGGTGCCCANGTGTTCTCGGTGGTCATTACCTTTTGCGACGGACAGG
TTTACTGGCATGTGTGTTTAAAGTTCCATGTCCGTGAAGTTTCTAGTGCATTTTGTGTTTATAGCTGAATTGCAGCATTT
GATTGTAGTGCTAGTGCCAACTCTTTTGCTTCAAACAATGATGCCTATGTGCCTATGTCTAGTGTGGACTCCCTATTATT
ATGCTTTCTGATGTAAGATTAGTGCTCCAATGAACTGCAATATTAATAGGCTATCATCGCAGCTAATGCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis