Browse Element(s) Details


Os.52228.1.S1_at

Description gb:AK065753.1
DB_XREF= gi:32975771
TID=Os.52228.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036G07, full insert sequence.
FL= gb:AK065753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3600011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35960OsAffx.31317.1.S1_at11/1111+20630355..20630840hypothetical protein
LOC_Os11g35970Os.51646.1.S1_at11/1111+20634360..20640655expressed protein
LOC_Os11g35980Os.52205.1.S1_at10/1111+20644445..20647550Leucine Rich Repeat family protein, expressed
LOC_Os11g35990OsAffx.22452.1.S1_x_at1/1111+20649277..20650409NA
LOC_Os11g36000Os.52228.1.S1_at11/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36000OsAffx.31317.1.S1_at2/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52228.1.S1_at--599--2491Chr11:20657163..20657187 (25 bp)
AACATACTATCAGGGCTTGTCGCAT
LOC_Os11g36000
Os.52228.1.S1_at--421--7591Chr11:20657175..20657199 (25 bp)
GGGCTTGTCGCATCAAACTTCGGAG
LOC_Os11g36000
Os.52228.1.S1_at--647--5251Chr11:20657219..20657243 (25 bp)
GAATCTATCCTCAAACAGCATCCAA
LOC_Os11g36000
Os.52228.1.S1_at--1040--1491Chr11:20657235..20657259 (25 bp)
AGCATCCAAGGCCAGATTCCAAGTT
LOC_Os11g36000
Os.52228.1.S1_at--995--1071Chr11:20657315..20657339 (25 bp)
CGGGAAACTTCCTCGATGCATTGGG
LOC_Os11g36000
Os.52228.1.S1_at--992--9811Chr11:20657375..20657399 (25 bp)
TAACTTATCTGGCACATTCCCATCT
LOC_Os11g36000
Os.52228.1.S1_at--682--2071Chr11:20657388..20657412 (25 bp)
ACATTCCCATCTTTACTGCAAGGCT
LOC_Os11g36000
Os.52228.1.S1_at--656--8331Chr11:20657409..20657433 (25 bp)
GGCTGCACACTGCTACGTTATATAG
LOC_Os11g36000
Os.52228.1.S1_at--1068--6291Chr11:20657624..20657648 (25 bp)
GATGAGAATGCCGTGCCATGTTCAA
LOC_Os11g36000
Os.52228.1.S1_at--18--8891Chr11:20657652..20657676 (25 bp)
TGAGGATCAAACTGCTTATCTGGTT
LOC_Os11g36000
Os.52228.1.S1_at--7--7871Chr11:20657673..20657697 (25 bp)
GGTTTGGGCCTCCTGAAAATACTTG
LOC_Os11g36000
Target Sequence 
AACATACTATCAGGGCTTGTCGCATCAAACTTCGGAGCGCCAAGACTAGATACTATGAATCTATCCTCAAACAGCATCCA
AGGCCAGATTCCAAGTTCGATTTGCAGGTTGAAATATTTGAGCACCTTGGATTTATCCAACAATCTTTTGAACGGGAAAC
TTCCTCGATGCATTGGGATGAGAAATCTCCAGAAGCTTCTACTAAGTAATAATAACTTATCTGGCACATTCCCATCTTTA
CTGCAAGGCTGCACACTGCTACGTTATATAGACCTATCATGGAATAGGTTTTATGGAAGATTACCGAGTTGGATTGGAGA
CTTCCAAGAATTAGTTTCTCTACAACTGAGGAACAATACTTTTTCTTGGTAATGTTCTTTCACTGAACATAGCAAGAATT
ACTCTATGTATATGTTAGGTGCCTCAAGGAAAGTAGTCGTATTCAGAGGTACAGCAGCGTTGATGAGAATGCCGTGCCAT
GTTCAATGATGAGGATCAAACTGCTTATCTGGTTTGGGCCTCCTGAAAATACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis