Browse Element(s) Details


OsAffx.31317.1.S1_at

Description tigr:9639.m03236
TID=OsAffx.31317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3596011/11hypothetical protein
LOC_Os11g360002/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35940Os.47463.1.S1_x_at2/1111+20606007..20610923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35940Os.14491.2.S1_x_at2/1111+20606007..20610923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35950NANA11+20616743..20618542retrotransposon protein, putative, unclassified
LOC_Os11g35960OsAffx.31317.1.S1_at11/1111+20630355..20630840hypothetical protein
LOC_Os11g35970Os.51646.1.S1_at11/1111+20634360..20640655expressed protein
LOC_Os11g35980Os.52205.1.S1_at10/1111+20644445..20647550Leucine Rich Repeat family protein, expressed
LOC_Os11g35990OsAffx.22452.1.S1_x_at1/1111+20649277..20650409NA
LOC_Os11g36000Os.52228.1.S1_at11/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36000OsAffx.31317.1.S1_at2/1111+20655461..20657747Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31317.1.S1_at--994--4632Chr11:20655724..20655748 (25 bp)
GCGTTAGGTGCAGCGACAACCTCAT
LOC_Os11g36000
OsAffx.31317.1.S1_at--723--22125Chr11:20630587..20630611 (25 bp)
ACAACCTCATCGGTCATGTCTTCGG
LOC_Os11g35960
OsAffx.31317.1.S1_at--829--9531Chr11:20630605..20630629 (25 bp)
TCTTCGGCCTTCACCTTCAAAATAA
LOC_Os11g35960
OsAffx.31317.1.S1_at--487--9191Chr11:20630621..20630645 (25 bp)
TCAAAATAACTTCTCGTGGTACAAC
LOC_Os11g35960
OsAffx.31317.1.S1_at--1096--9411Chr11:20630634..20630658 (25 bp)
TCGTGGTACAACGAAGCAACAGCTT
LOC_Os11g35960
OsAffx.31317.1.S1_at--71--2851Chr11:20630672..20630696 (25 bp)
AAGTACTTCTCTGCTCGCTCTCGAA
LOC_Os11g35960
OsAffx.31317.1.S1_at--255--4811Chr11:20630688..20630712 (25 bp)
GCTCTCGAACAGCTAGAGCACCTTG
LOC_Os11g35960
OsAffx.31317.1.S1_at--1041--71Chr11:20630750..20630774 (25 bp)
ATTCCCAGGGTTCGTCAGCTATCTC
LOC_Os11g35960
OsAffx.31317.1.S1_at--76--1571Chr11:20630766..20630790 (25 bp)
AGCTATCTCAGGAACCTGGTATATC
LOC_Os11g35960
OsAffx.31317.1.S1_at--166--3911Chr11:20630781..20630805 (25 bp)
CTGGTATATCTTAACTTCTCCGGAA
LOC_Os11g35960
OsAffx.31317.1.S1_at--138--251Chr11:20630786..20630810 (25 bp)
ATATCTTAACTTCTCCGGAATGCCA
LOC_Os11g35960
Target Sequence 
GCGTTAGGTGCAGCGACAACCTCATCGGTCATGTCTTCGGCCTTCACCTTCAAAATAACTTCTCGTGGTACAACGAAGCA
ACAGCTTTGGTGGGGCACATAAGTACTTCTCTGCTCGCTCTCGAACAGCTAGAGCACCTTGACCTCAGCAACAACAATCT
CGTGGGTCCAGCCGGCCGATTCCCAGGGTTCGTCAGCTATCTCAGGAACCTGGTATATCTTAACTTCTCCGGAATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis