Browse Element(s) Details


Os.51646.1.S1_at

Description gb:AK063257.1
DB_XREF= gi:32973275
TID=Os.51646.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H11, full insert sequence.
FL= gb:AK063257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3597011/11expressed protein
LOC_Os05g0340011/11expressed protein
LOC_Os06g018201/11hypothetical protein
LOC_Os06g188101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35940Os.47463.1.S1_x_at2/1111+20606007..20610923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35940Os.14491.2.S1_x_at2/1111+20606007..20610923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35950NANA11+20616743..20618542retrotransposon protein, putative, unclassified
LOC_Os11g35960OsAffx.31317.1.S1_at11/1111+20630355..20630840hypothetical protein
LOC_Os11g35970Os.51646.1.S1_at11/1111+20634360..20640655expressed protein
LOC_Os11g35980Os.52205.1.S1_at10/1111+20644445..20647550Leucine Rich Repeat family protein, expressed
LOC_Os11g35990OsAffx.22452.1.S1_x_at1/1111+20649277..20650409NA
LOC_Os11g36000Os.52228.1.S1_at11/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36000OsAffx.31317.1.S1_at2/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51646.1.S1_at--1130--7574Chr05:1390628..1390652 (25 bp)
GGGCATCGATTGATCACTTGGACTT
LOC_Os05g03400
Os.51646.1.S1_at--99--10794Chr05:1390637..1390661 (25 bp)
TTGATCACTTGGACTTGGTGGAGCT
LOC_Os05g03400
Os.51646.1.S1_at--760--8534Chr05:1390655..1390679 (25 bp)
TGGAGCTGAAGCTCTCGACGGCGGC
LOC_Os05g03400
Os.51646.1.S1_at--161--1637Chr06:469847..469870 (24 bp)
AGCCGGTGGGCACCCTTGTCGATCT
LOC_Os06g01820
Os.51646.1.S1_at--74--10595Chr05:1390748..1390772 (25 bp)
TTCTCTCTCAGCTCTAGAAGCTTCC
LOC_Os05g03400
Os.51646.1.S1_at--889--5394Chr05:1390764..1390788 (25 bp)
GAAGCTTCCAGAATTTGTATTACTT
LOC_Os05g03400
Os.51646.1.S1_at--834--10534Chr05:1390795..1390819 (25 bp)
TTCTTCTCTTTTCATCCCAAAACAA
LOC_Os05g03400
Os.51646.1.S1_at--911--10354Chr05:1390803..1390827 (25 bp)
TTTTCATCCCAAAACAATTGTTCCT
LOC_Os05g03400
Os.51646.1.S1_at--805--2454Chr05:1390815..1390839 (25 bp)
AACAATTGTTCCTTGTATGGTGGAT
LOC_Os05g03400
Os.51646.1.S1_at--128--3634Chr05:1390826..1390850 (25 bp)
CTTGTATGGTGGATGCTTGCTATTA
LOC_Os05g03400
Os.51646.1.S1_at--122--10114Chr05:1390830..1390854 (25 bp)
TATGGTGGATGCTTGCTATTAAGTT
LOC_Os05g03400
Target Sequence 
GGGCATCGATTGATCACTTGGACTTGGTGGAGCTGAAGCTCTCGACGGCGGCGGCGACCTGGGCAGCCGGTGGGCACCCT
TGTCGATCTCTCTCCCCTACCTCTCCTCCTACTTACAGCCTTCTCTCTCAGCTCTAGAAGCTTCCAGAATTTGTATTACT
TAGTTTCTTCTTCTCTTTTCATCCCAAAACAATTGTTCCTTGTATGGTGGATGCTTGCTATTAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis