Browse Element(s) Details


Os.18652.1.S1_at

Description gb:AK059656.1
DB_XREF= gi:32969674
TID=Os.18652.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D04, full insert sequence.
FL= gb:AK059656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3605011/11KE2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36070Os.18018.1.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.18018.2.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.22735.1.S1_at1/1111+20700399..20706011expressed protein
LOC_Os11g36090OsAffx.7310.1.S1_at11/1111+20709395..20714997Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18652.1.S1_at--95--7371Chr11:20685870..20685894 (25 bp)
GTGAACACTCTCTTGTGATTGGCGC
LOC_Os11g36050
Os.18652.1.S1_at--709--6611Chr11:20685886..20685910 (25 bp)
GATTGGCGCAATCGAGCCACTGGAT
LOC_Os11g36050
Os.18652.1.S1_at--321--8571Chr11:20685906..20685930 (25 bp)
TGGATCACTCAAGGCGCTGCTACAG
LOC_Os11g36050
Os.18652.1.S1_at--762--1331Chr11:20686009..20686033 (25 bp)
AGAGGTAATCGCTCGCATGCATGAA
LOC_Os11g36050
Os.18652.1.S1_at--779--7791Chr11:20686166..20686190 (25 bp)
GGTCCTGCTGGCCAGTGAAGCAAAA
LOC_Os11g36050
Os.18652.1.S1_at--229--10091Chr11:20686233..20686257 (25 bp)
TAGGTTGCTCTTTGCTAGATGTCAA
LOC_Os11g36050
Os.18652.1.S1_at--1084--751Chr11:20686251..20686275 (25 bp)
ATGTCAACTGATTTCGGTCTCTCTT
LOC_Os11g36050
Os.18652.1.S1_at--150--7171Chr11:20686267..20686291 (25 bp)
GTCTCTCTTTCTATCTGTGTGTGAA
LOC_Os11g36050
Os.18652.1.S1_at--936--2031Chr11:20686299..20686323 (25 bp)
ACTATTCTTCTGTGGAACCGTGGAA
LOC_Os11g36050
Os.18652.1.S1_at--605--8211Chr11:20686320..20686344 (25 bp)
GGAATCCGTTCCATGTACAATTGAA
LOC_Os11g36050
Os.18652.1.S1_at--893--3011Chr11:20686343..20686367 (25 bp)
AATGCTATCTGGCTATGCTAGTTGA
LOC_Os11g36050
Target Sequence 
GTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTG
GTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAACAAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCA
TGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCA
ACGCNGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAA
ATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTC
TCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTA
TCTGGCTATGCTAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis