Browse Element(s) Details


OsAffx.7311.1.S1_at

Description tigr:9639.m03253
TID=OsAffx.7311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3612011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36090OsAffx.7310.1.S1_at11/1111+20709395..20714997Leucine Rich Repeat family protein, expressed
LOC_Os11g36100NANA11+20723486..20723908retrotransposon protein, putative, unclassified
LOC_Os11g36110OsAffx.8923.1.S1_at7/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.47999.3.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.51887.1.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36120OsAffx.7311.1.S1_at11/1111+20731323..20733951Leucine Rich Repeat family protein
LOC_Os11g36130OsAffx.19183.1.S1_at11/1111+20739476..20740428hypothetical protein
LOC_Os11g36140OsAffx.7312.1.S1_at11/1111+20742087..20745499Leucine Rich Repeat family protein, expressed
LOC_Os11g36150Os.20861.1.S1_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36150Os.17190.1.A1_s_at11/1111+20749601..20753367receptor kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7311.1.S1_at--906--8091Chr11:20731887..20731911 (25 bp)
GGACCTAGCAGCCAACAGTTTATCA
LOC_Os11g36120
OsAffx.7311.1.S1_at--904--951Chr11:20731816..20731840 (25 bp)
AGGACGGCTACAATGCTTCAGGTTC
LOC_Os11g36120
OsAffx.7311.1.S1_at--947--6691Chr11:20731795..20731819 (25 bp)
GTTCCGTACCTGAAGATGGCTTGTC
LOC_Os11g36120
OsAffx.7311.1.S1_at--1081--851Chr11:20731780..20731804 (25 bp)
ATGGCTTGTCATCAAACTGCTTAAT
LOC_Os11g36120
OsAffx.7311.1.S1_at--1161--3091Chr11:20731737..20731761 (25 bp)
AATAGCTTCTCTTGCTGCTTTGAAA
LOC_Os11g36120
OsAffx.7311.1.S1_at--553--6611Chr11:20731665..20731689 (25 bp)
GATTGGATCATTGCAGTCACTGGAA
LOC_Os11g36120
OsAffx.7311.1.S1_at--792--8511Chr11:20731645..20731669 (25 bp)
TGGAATCGCTCGAGCTCTCAAGGAA
LOC_Os11g36120
OsAffx.7311.1.S1_at--1032--531Chr11:20731604..20731628 (25 bp)
ATCCCATCTACCCTATCAAATTTAT
LOC_Os11g36120
OsAffx.7311.1.S1_at--725--5951Chr11:20731572..20731596 (25 bp)
GAGCAATTTGGATCTGTCGTACAAC
LOC_Os11g36120
OsAffx.7311.1.S1_at--470--8251Chr11:20731511..20731535 (25 bp)
GGCACCCTATACATGGAACATCCTG
LOC_Os11g36120
OsAffx.7311.1.S1_at--861--10317Chr11:16907998..16908022 (25 bp)
TTTCTAGGGTTAGCCTACTCAGCTC
NONE
Target Sequence 
GGACCTAGCAGCCAACAGTTTATCAGGTAACTTACCGCGGAGTTTCACAAAATTAGAGGGGATGAAGCGAGAGGACGGCT
ACAATGCTTCAGGTTCCGTACCTGAAGATGGCTTGTCATCAAACTGCTTAATTGGTGGAATTCCCGAACAAATAGCTTCT
CTTGCTGCTTTGAAAAATCTGAATTTGTCAAGGAATAACTTGAATGGAAAAATTCCATACAAGATTGGATCATTGCAGTC
ACTGGAATCGCTCGAGCTCTCAAGGAACAATCTTTCTGGAGAGATCCCATCTACCCTATCAAATTTATCATATTTGAGCA
ATTTGGATCTGTCGTACAACAATCTATCAGGAACAATACCCTCCGGATCACAACTTGGCACCCTATACATGGAACATCCT
GATATGTATAATGGCAACAATGGTCTATGTGGGCCTCCTCTTCGAAGGAACTGCTCGGGAGATATTGAACCAAGGCAACA
TGGCTATGGTGATGACAACTATTGTTCAATTTGGGGAATTTTTCTAGGGTTAGCCTACTCAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis