Browse Element(s) Details


Os.20861.1.S1_at

Description gb:AK102251.1
DB_XREF= gi:32987460
TID=Os.20861.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088G21, full insert sequence.
FL= gb:AK102251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3615011/11receptor kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36110OsAffx.8923.1.S1_at7/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.47999.3.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.51887.1.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36120OsAffx.7311.1.S1_at11/1111+20731323..20733951Leucine Rich Repeat family protein
LOC_Os11g36130OsAffx.19183.1.S1_at11/1111+20739476..20740428hypothetical protein
LOC_Os11g36140OsAffx.7312.1.S1_at11/1111+20742087..20745499Leucine Rich Repeat family protein, expressed
LOC_Os11g36150Os.20861.1.S1_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36150Os.17190.1.A1_s_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36160Os.26792.1.S1_at11/1111+20759800..20764523receptor kinase, putative, expressed
LOC_Os11g36170OsAffx.19184.1.S1_at11/1111+20768969..20770330hypothetical protein
LOC_Os11g36180OsAffx.31320.1.S1_at11/1111+20772217..20776127Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20861.1.S1_at--336--8811Chr11:20750059..20750083 (25 bp)
TGTTGACACCCAGCTGTTCTTGGGC
LOC_Os11g36150
Os.20861.1.S1_at--533--1811Chr11:20750052..20750076 (25 bp)
ACCCAGCTGTTCTTGGGCCTTGAGA
LOC_Os11g36150
Os.20861.1.S1_at--592--10691Chr11:20749981..20750005 (25 bp)
TTGCCTGGTCGCATTACTCAGGCTT
LOC_Os11g36150
Os.20861.1.S1_at--698--6051Chr11:20749891..20749915 (25 bp)
GAGTTCAATCAAACAATCCTTGTAG
LOC_Os11g36150
Os.20861.1.S1_at--527--2412Chr11:20749881..20749905 (25 bp)
AAACAATCCTTGTAGGGAACACATA
LOC_Os11g36150
Os.20861.1.S1_at--1023--231Chr11:20749856..20749880 (25 bp)
ATATATCTTCGAGCTGAATGACAGT
LOC_Os11g36150
Os.20861.1.S1_at--979--8951Chr11:20749838..20749862 (25 bp)
TGACAGTTTGGAGTTCATTCCTTGG
LOC_Os11g36150
Os.20861.1.S1_at--923--8611Chr11:20749816..20749840 (25 bp)
TGGGTGTTCATCTCTTACCCTTTCA
LOC_Os11g36150
Os.20861.1.S1_at--513--451Chr11:20749807..20749831 (25 bp)
ATCTCTTACCCTTTCATACCTTGTT
LOC_Os11g36150
Os.20861.1.S1_at--607--2511Chr11:20749685..20749709 (25 bp)
AACATATCCGTGATTTATGTCTTTT
LOC_Os11g36150
Os.20861.1.S1_at--453--3511Chr11:20749635..20749659 (25 bp)
CATGTACTTTGTCCAGACATAATAA
LOC_Os11g36150
Target Sequence 
TGTTGACACCCAGCTGTTCTTGGGCCTTGAGAATGAATTTCAAACCGCTGACGATTCTTCATGCAAAGGAGGGATCAATT
GCCTGGTCGCATTACTCAGGCTTGGATTGTATTGCTCTCAGGAAATGCCGTCGAATAGAATGTTAACTGGAGATATTATT
AAGGAATTGAGTTCAATCAAACAATCCTTGTAGGGAACACATAATATATCTTCGAGCTGAATGACAGTTTGGAGTTCATT
CCTTGGGTGTTCATCTCTTACCCTTTCATACCTTGTTGGTTTATGCATAGTACACTGAAGTATACTGTTATCACTTGGGA
TTTGGACATCTGAGCGCAAAAACTGATTGCCATGCAGTTGTAATCATGCCTGTAAACATATCCGTGATTTATGTCTTTTT
TGCTAGGAAAAGCATTTTTCCAGTCATGTACTTTGTCCAGACATAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis