Browse Element(s) Details


OsAffx.31320.1.S1_at

Description tigr:9639.m03259
TID=OsAffx.31320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3618011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36150Os.20861.1.S1_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36150Os.17190.1.A1_s_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36160Os.26792.1.S1_at11/1111+20759800..20764523receptor kinase, putative, expressed
LOC_Os11g36170OsAffx.19184.1.S1_at11/1111+20768969..20770330hypothetical protein
LOC_Os11g36180OsAffx.31320.1.S1_at11/1111+20772217..20776127Leucine Rich Repeat family protein
LOC_Os11g36190Os.54389.1.S1_at11/1111+20783539..20788203receptor kinase, putative, expressed
LOC_Os11g36200Os.49819.1.S1_at11/1111+20796523..20800083receptor kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31320.1.S1_at--630--5231Chr11:20773474..20773498 (25 bp)
GAATACTTGTTGATGGGACCTCATT
LOC_Os11g36180
OsAffx.31320.1.S1_at--321--871Chr11:20772590..20772614 (25 bp)
ATGGCGTCGGGCACATTGCATCAAC
LOC_Os11g36180
OsAffx.31320.1.S1_at--1046--7611Chr11:20772516..20772540 (25 bp)
GGGAAGCGGCCAACTGACAGTACAT
LOC_Os11g36180
OsAffx.31320.1.S1_at--779--5631Chr11:20772501..20772525 (25 bp)
GACAGTACATTCAGACCCGATTTGG
LOC_Os11g36180
OsAffx.31320.1.S1_at--971--6971Chr11:20772466..20772490 (25 bp)
GTACGTTGAACTGGGCCTACATGGC
LOC_Os11g36180
OsAffx.31320.1.S1_at--1010--5631Chr11:20772423..20772447 (25 bp)
GACACGAAGCTCATTTTGGATTCTG
LOC_Os11g36180
OsAffx.31320.1.S1_at--765--3331Chr11:20772355..20772379 (25 bp)
CACTGAATGCATTGTTTCGCTGCTT
LOC_Os11g36180
OsAffx.31320.1.S1_at--938--9091Chr11:20772315..20772339 (25 bp)
TGCTCTCAGGTTTTGCCATTGAGTA
LOC_Os11g36180
OsAffx.31320.1.S1_at--331--5451Chr11:20772290..20772314 (25 bp)
GAACGCCAACCGGAGATATCATCGA
LOC_Os11g36180
OsAffx.31320.1.S1_at--485--9611Chr11:20772272..20772296 (25 bp)
TCATCGACGAACTGAATGCCATCAA
LOC_Os11g36180
OsAffx.31320.1.S1_at--538--2471Chr11:20772248..20772272 (25 bp)
AACAGAATCTCTCCGGATTGTTTCC
LOC_Os11g36180
Target Sequence 
GAATACTTGTTGATGGGACCTCATTGATACAACAGTCAACAAGCTCGATGGGATTTAGAGGGACAATTGGCTATGCAGCA
CCAGAGTATGGCGTCGGGCACATTGCATCAACACATGGAGATATTTACAGCTATGGAATTCTAGTGCTGGAAATAGTAAC
CGGGAAGCGGCCAACTGACAGTACATTCAGACCCGATTTGGGCCTCCGTCAGTACGTTGAACTGGGCCTACATGGCAGAG
TGACGGATGTTGTTGACACGAAGCTCATTTTGGATTCTGAGAACTGGCTGAACAGTACAAATAATTCTCCATGTAGAAGA
ATCACTGAATGCATTGTTTCGCTGCTTAGACTTGGGTTGTCTTGCTCTCAGGTTTTGCCATTGAGTAGAACGCCAACCGG
AGATATCATCGACGAACTGAATGCCATCAAACAGAATCTCTCCGGATTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis