Browse Element(s) Details


Os.49819.1.S1_at

Description gb:AK111751.1
DB_XREF= gi:37988414
TID=Os.49819.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050J11, full insert sequence.
FL= gb:AK111751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3620011/11receptor kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36180OsAffx.31320.1.S1_at11/1111+20772217..20776127Leucine Rich Repeat family protein
LOC_Os11g36190Os.54389.1.S1_at11/1111+20783539..20788203receptor kinase, putative, expressed
LOC_Os11g36200Os.49819.1.S1_at11/1111+20796523..20800083receptor kinase, putative, expressed
LOC_Os11g36210NANA11+20807117..20807833hypothetical protein
LOC_Os11g36220NANA11+20809539..20816292retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36230Os.9609.1.S1_at11/1111+20822700..20823660expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49819.1.S1_at--933--9331Chr11:20799609..20799633 (25 bp)
TCGCGAATACGTGAAGTCTGGTCTA
LOC_Os11g36200
Os.49819.1.S1_at--737--10751Chr11:20799656..20799680 (25 bp)
TTGACATGCGTCTATGTATGGACCT
LOC_Os11g36200
Os.49819.1.S1_at--1046--10411Chr11:20799680..20799704 (25 bp)
TTACGAACGGCATTCCAACTGGGAA
LOC_Os11g36200
Os.49819.1.S1_at--99--7911Chr11:20799726..20799750 (25 bp)
GGTTGAATGCATCGTTTTACTTCTT
LOC_Os11g36200
Os.49819.1.S1_at--757--2391Chr11:20799751..20799775 (25 bp)
AAACTTGGAATGTCCTGCTCTCAGG
LOC_Os11g36200
Os.49819.1.S1_at--474--4791Chr11:20799767..20799791 (25 bp)
GCTCTCAGGAATTACCCTCAAGCAG
LOC_Os11g36200
Os.49819.1.S1_at--987--8071Chr11:20799816..20799840 (25 bp)
GGAGCTTCTGGCCATCAAAGAATCT
LOC_Os11g36200
Os.49819.1.S1_at--179--2351Chr11:20799832..20799856 (25 bp)
AAAGAATCTCTCTCAGGCGACGAGC
LOC_Os11g36200
Os.49819.1.S1_at--444--231Chr11:20799881..20799905 (25 bp)
ATATGCCAAATGTCATGCTGCGATG
LOC_Os11g36200
Os.49819.1.S1_at--493--4791Chr11:20799947..20799971 (25 bp)
GCTCCTTTCTCAAGTGTTCCATGAA
LOC_Os11g36200
Os.49819.1.S1_at--189--451Chr11:20800005..20800029 (25 bp)
ATCTTTCTGCTAATCTGTGAACCTG
LOC_Os11g36200
Target Sequence 
TCGCGAATACGTGAAGTCTGGTCTAGAAGACGAAGTGATGGAAATTGTTGACATGCGTCTATGTATGGACCTTACGAACG
GCATTCCAACTGGGAATGATGCCACATACAAAAGAAAGGTTGAATGCATCGTTTTACTTCTTAAACTTGGAATGTCCTGC
TCTCAGGAATTACCCTCAAGCAGATCGTCAACCGGAGATATTGTGAAGGAGCTTCTGGCCATCAAAGAATCTCTCTCAGG
CGACGAGCACAAGATGTGATGATGGAAGATATATATGCCAAATGTCATGCTGCGATGATTCATGTATCGATGATATATAT
GCTGTTGGATGACATTAGGCTCCTTTCTCAAGTGTTCCATGAAATGTTTTGAACATCGAATGATCACTGAAATTGTATCT
TTCTGCTAATCTGTGAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis