Browse Element(s) Details


Os.9609.1.S1_at

Description gb:AK070108.1
DB_XREF= gi:32980132
TID=Os.9609.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045F18, full insert sequence.
FL= gb:AK070108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36200Os.49819.1.S1_at11/1111+20796523..20800083receptor kinase, putative, expressed
LOC_Os11g36210NANA11+20807117..20807833hypothetical protein
LOC_Os11g36220NANA11+20809539..20816292retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36230Os.9609.1.S1_at11/1111+20822700..20823660expressed protein
LOC_Os11g36240OsAffx.31322.1.S1_at11/1111+20834017..20836662Pectinesterase family protein
LOC_Os11g36250OsAffx.22452.1.S1_x_at1/1111+20843213..20844704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g36260NANA11+20846044..20846421transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9609.1.S1_at--695--6151Chr11:20823145..20823169 (25 bp)
GAGGTACCCGAAAGTCCAGAGCTTC
LOC_Os11g36230
Os.9609.1.S1_at--137--2431Chr11:20823114..20823138 (25 bp)
AACAAGTTCGAATCGGGCGCCGCTC
LOC_Os11g36230
Os.9609.1.S1_at--44--5611Chr11:20823063..20823087 (25 bp)
GACAAGACTTCCACCGCCGATGAGG
LOC_Os11g36230
Os.9609.1.S1_at--873--4511Chr11:20823030..20823054 (25 bp)
GCCGACAAGTTTCATGCCATCTGGG
LOC_Os11g36230
Os.9609.1.S1_at--417--6591Chr11:20822997..20823021 (25 bp)
GATTGCGCAGAGACACTCGCCCAAT
LOC_Os11g36230
Os.9609.1.S1_at--331--3111Chr11:20822928..20822952 (25 bp)
AATTGACCTACTACTACGTACGACA
LOC_Os11g36230
Os.9609.1.S1_at--300--1071Chr11:20822904..20822928 (25 bp)
AGGGAACATGGTCGTCATCACTCAT
LOC_Os11g36230
Os.9609.1.S1_at--126--7811Chr11:20822895..20822919 (25 bp)
GGTCGTCATCACTCATCATATTGCA
LOC_Os11g36230
Os.9609.1.S1_at--688--3091Chr11:20822866..20822890 (25 bp)
AATACTGCATGCGTCCATTCCAAGT
LOC_Os11g36230
Os.9609.1.S1_at--759--10151Chr11:20822763..20822787 (25 bp)
TATCGCAGTTCGTTCATTCACATGT
LOC_Os11g36230
Os.9609.1.S1_at--322--131Chr11:20822748..20822772 (25 bp)
ATTCACATGTACTCGCAAGTGCTAT
LOC_Os11g36230
Target Sequence 
GAGGTACCCGAAAGTCCAGAGCTTCCTCCGCAACAAGTTCGAATCGGGCGCCGCTCCCCCACTATGCAAGAGCGGCTGCC
CCGACAAGACTTCCACCGCCGATGAGGCCGCCATCGCCGACAAGTTTCATGCCATCTGGGCGCTCATGGATTGCGCAGAG
ACACTCGCCCAATACTACGTCCTCCCTCCGCCTCCGCCGCCAAAACGCTAATTAATTAATTGACCTACTACTACGTACGA
CAGGGAACATGGTCGTCATCACTCATCATATTGCAGACAAATACTGCATGCGTCCATTCCAAGTTTTTTTTTTGATAATC
GATTAAGTTCTCAAATCAATTATATGTACTCCTATACTTGGAGACTGATTACAGTACATTTATATCGCAGTTCGTTCATT
CACATGTACTCGCAAGTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis