Browse Element(s) Details


OsAffx.31322.1.S1_at

Description tigr:9639.m03265
TID=OsAffx.31322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pectinesterase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3624011/11Pectinesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36220NANA11+20809539..20816292retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36230Os.9609.1.S1_at11/1111+20822700..20823660expressed protein
LOC_Os11g36240OsAffx.31322.1.S1_at11/1111+20834017..20836662Pectinesterase family protein
LOC_Os11g36250OsAffx.22452.1.S1_x_at1/1111+20843213..20844704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g36260NANA11+20846044..20846421transposon protein, putative, unclassified
LOC_Os11g36270NANA11+20849413..20851513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g36280Os.46306.1.S1_x_at6/1111+20854834..20867202transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31322.1.S1_at--832--3331Chr11:20836068..20836092 (25 bp)
CACTGTACTGTACCGGTGCGAGCTG
LOC_Os11g36240
OsAffx.31322.1.S1_at--12--1631Chr11:20836088..20836112 (25 bp)
AGCTGGAGAGCTTTCAGGACACCTT
LOC_Os11g36240
OsAffx.31322.1.S1_at--116--8131Chr11:20836104..20836128 (25 bp)
GGACACCTTGTACGCTGAGAACGGA
LOC_Os11g36240
OsAffx.31322.1.S1_at--1143--1431Chr11:20836121..20836145 (25 bp)
AGAACGGACTGCAGTTGTACCTCGA
LOC_Os11g36240
OsAffx.31322.1.S1_at--198--10791Chr11:20836135..20836159 (25 bp)
TTGTACCTCGACAGCGTGATTTCAG
LOC_Os11g36240
OsAffx.31322.1.S1_at--111--911Chr11:20836190..20836214 (25 bp)
AGGCGGTGTTCCAGAGATGCCATCT
LOC_Os11g36240
OsAffx.31322.1.S1_at--782--8291Chr11:20836291..20836315 (25 bp)
GGCTTCAGCTTCCAGAACTGCAGCA
LOC_Os11g36240
OsAffx.31322.1.S1_at--1030--5811Chr11:20836476..20836500 (25 bp)
GACCAAGACCGTGTCGTACATGAAG
LOC_Os11g36240
OsAffx.31322.1.S1_at--935--8991Chr11:20836496..20836520 (25 bp)
TGAAGTTCAACAATACGGGACCCGG
LOC_Os11g36240
OsAffx.31322.1.S1_at--507--10571Chr11:20836555..20836579 (25 bp)
TTCTCCGTGGTCGACGCTAGCAAAG
LOC_Os11g36240
OsAffx.31322.1.S1_at--408--2691Chr11:20836577..20836601 (25 bp)
AAGCTGAGGAGTACACCGTCGACCG
LOC_Os11g36240
Target Sequence 
CACTGTACTGTACCGGTGCGAGCTGGAGAGCTTTCAGGACACCTTGTACGCTGAGAACGGACTGCAGTTGTACCTCGACA
GCGTGATTTCAGGCACGGTGGACTTCGTCTTCGGCAACGCCAAGGCGGTGTTCCAGAGATGCCATCTCCTCGTGCGCCGC
GGAAGGGAAGGTGCGCACAACATCATCACGGCGCAGGGCCGCGACAAGCCCGGCGACGACACCGGCTTCAGCTTCCAGAA
CTGCAGCATCATGGCCAAGCCCAACGAGAACCTGACGGGCGTCGAGACATTCCTCGGCCGCCCGTGGAAGAACCACTCGC
ACGTCATCTTCATGCAGTCGTTCCTCGACGGCATCGTGCACCCGAAGGGCTGGGTGGAGTGGGACAAGAGCAAGCACGTC
TTGGAGACGACCAAGACCGTGTCGTACATGAAGTTCAACAATACGGGACCCGGATCGGACACCAGCCGCCGCGTCAACTG
GGAGGGCTTCTCCGTGGTCGACGCTAGCAAAGCTGAGGAGTACACCGTCGACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis