Browse Element(s) Details


Os.54389.1.S1_at

Description gb:AK103869.1
DB_XREF= gi:32989078
TID=Os.54389.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149H15, full insert sequence.
FL= gb:AK103869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3619011/11receptor kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36160Os.26792.1.S1_at11/1111+20759800..20764523receptor kinase, putative, expressed
LOC_Os11g36170OsAffx.19184.1.S1_at11/1111+20768969..20770330hypothetical protein
LOC_Os11g36180OsAffx.31320.1.S1_at11/1111+20772217..20776127Leucine Rich Repeat family protein
LOC_Os11g36190Os.54389.1.S1_at11/1111+20783539..20788203receptor kinase, putative, expressed
LOC_Os11g36200Os.49819.1.S1_at11/1111+20796523..20800083receptor kinase, putative, expressed
LOC_Os11g36210NANA11+20807117..20807833hypothetical protein
LOC_Os11g36220NANA11+20809539..20816292retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54389.1.S1_at--577--8191Chr11:20784087..20784111 (25 bp)
GGAAGAGGCCCACAGATAAGAAATT
LOC_Os11g36190
Os.54389.1.S1_at--445--9551Chr11:20783983..20784007 (25 bp)
TCTTTGCACCTTGAGAATGAACTTC
LOC_Os11g36190
Os.54389.1.S1_at--519--6591Chr11:20783933..20783957 (25 bp)
GATTGATTGCCTGGTTTCATTGCTT
LOC_Os11g36190
Os.54389.1.S1_at--360--5271Chr11:20783837..20783861 (25 bp)
GAATGCCATAAAACAAACCCTCTTG
LOC_Os11g36190
Os.54389.1.S1_at--630--8071Chr11:20783772..20783796 (25 bp)
GGAGCTCATCCCTGGAGTGTTCATT
LOC_Os11g36190
Os.54389.1.S1_at--1124--8511Chr11:20783760..20783784 (25 bp)
TGGAGTGTTCATTTCCTACCCTTCC
LOC_Os11g36190
Os.54389.1.S1_at--803--9311Chr11:20783738..20783762 (25 bp)
TCCCTTGTTGGATTATGCATGGCAC
LOC_Os11g36190
Os.54389.1.S1_at--922--10111Chr11:20783725..20783749 (25 bp)
TATGCATGGCACTGAAGTATGTCTC
LOC_Os11g36190
Os.54389.1.S1_at--47--7171Chr11:20783705..20783729 (25 bp)
GTCTCACTTGTAATTTGGACATCTG
LOC_Os11g36190
Os.54389.1.S1_at--193--6911Chr11:20783606..20783630 (25 bp)
GTATGCAACTTTGTACTTTGTGATC
LOC_Os11g36190
Os.54389.1.S1_at--73--6891Chr11:20783571..20783595 (25 bp)
GTATATCATGTGTCTCTAACAATAA
LOC_Os11g36190
Target Sequence 
GGAAGAGGCCCACAGATAAGAAATTCATACAAGGATTGAGCCTCCGTGAGTATGTTGAGCTGGGTCTACATGGTAAAATG
ATGGATGTTGTCGACACTCAGCTNTCTTTGCACCTTGAGAATGAACTTCNTACCACGGATGAATACAAAGTCATGATTGA
TTGCCTGGTTTCATTGCTTAGGCTTGGATTGTATTGCTCTCAGGAAATACCGTCGAATAGAATGTCAACTGGAGATATTA
TTAAGGAATTGAATGCCATAAAACAAACCCTCTTGTAGGGAATAGATAACATCCTTGAACNCCTTGTCAGATTTTGGAGC
TCATCCCTGGAGTGTTCATTTCCTACCCTTCCCTTGTTGGATTATGCATGGCACTGAAGTATGTCTCACTTGTAATTTGG
ACATCTGAGAGCAAAAACTGATTGTTATGCTGTTGTAATTATGTCTATAAACGTATCCAAGATTATGTTTTTTNCACNTT
GTAGTATGCAACTTTGTACTTTGTGATCGTTANAACNAGTATATCATGTGTCTCTAACAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis