Browse Element(s) Details


OsAffx.19184.1.S1_at

Description tigr:9639.m03258
TID=OsAffx.19184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3617011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36140OsAffx.7312.1.S1_at11/1111+20742087..20745499Leucine Rich Repeat family protein, expressed
LOC_Os11g36150Os.20861.1.S1_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36150Os.17190.1.A1_s_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36160Os.26792.1.S1_at11/1111+20759800..20764523receptor kinase, putative, expressed
LOC_Os11g36170OsAffx.19184.1.S1_at11/1111+20768969..20770330hypothetical protein
LOC_Os11g36180OsAffx.31320.1.S1_at11/1111+20772217..20776127Leucine Rich Repeat family protein
LOC_Os11g36190Os.54389.1.S1_at11/1111+20783539..20788203receptor kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19184.1.S1_at--575--1231Chr11:20769488..20769512 (25 bp)
AGTTCCACCCAAGGAGAGCGACTTC
LOC_Os11g36170
OsAffx.19184.1.S1_at--656--3351Chr11:20769448..20769472 (25 bp)
CACGACGAGCTGATTCCATGGGAGT
LOC_Os11g36170
OsAffx.19184.1.S1_at--971--791Chr11:20769431..20769455 (25 bp)
ATGGGAGTATTTCCGCAACATCGTC
LOC_Os11g36170
OsAffx.19184.1.S1_at--913--5611Chr11:20769391..20769415 (25 bp)
GACACAATGCGGTTCGTCAGCATCG
LOC_Os11g36170
OsAffx.19184.1.S1_at--449--7391Chr11:20769340..20769364 (25 bp)
GTGATACGCAGCCTGTGCGACCGCT
LOC_Os11g36170
OsAffx.19184.1.S1_at--197--9231Chr11:20769316..20769340 (25 bp)
TCCAGCTCGGCGTTCATGGTGACCA
LOC_Os11g36170
OsAffx.19184.1.S1_at--188--811Chr11:20769301..20769325 (25 bp)
ATGGTGACCATCTGGAGGCTTGCCC
LOC_Os11g36170
OsAffx.19184.1.S1_at--814--8691Chr11:20769147..20769171 (25 bp)
TGTGCCCGTTCGTGAGCTCGGAGAA
LOC_Os11g36170
OsAffx.19184.1.S1_at--500--9411Chr11:20769114..20769138 (25 bp)
TCGTCTGGTTCGTCGCATGCGATGA
LOC_Os11g36170
OsAffx.19184.1.S1_at--736--2751Chr11:20769043..20769067 (25 bp)
AAGACGCTGATATCGGTTGTCCCCT
LOC_Os11g36170
OsAffx.19184.1.S1_at--688--551Chr11:20769009..20769033 (25 bp)
ATCCGCATTCGCATAGATGTATAGG
LOC_Os11g36170
Target Sequence 
AGTTCCACCCAAGGAGAGCGACTTCGACGACGACCACCACCACGACGAGCTGATTCCATGGGAGTATTTCCGCAACATCG
TCGCCGCCGACGGCGACGACACAATGCGGTTCGTCAGCATCGACAACCGCTGCTGCTGCGGCGCGCCGGTGATACGCAGC
CTGTGCGACCGCTCCAGCTCGGCGTTCATGGTGACCATCTGGAGGCTTGCCCTGCGGAACGCCGGCGACGGCGACGGCGG
CGGCGAGCCGATGGCGTGGGTGAAGGAAGCCGTGCTGGACTGCGAGGAGCTCTGGGCGATGCTGGCGCCATGCGACGGCC
TCCCGCGTCGCGTGTACGTGGTGTGCCCGTTCGTGAGCTCGGAGAACCCCGACGTCGTCTGGTTCGTCGCATGCGATGAC
GACGAGGACGGCAAGAATTGGACGGTCGAGATCGACGTGAGGAGGAAGACGCTGATATCGGTTGTCCCCTTGCCGCCTCA
TCCGCATTCGCATAGATGTATAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis