Browse Element(s) Details


Os.17190.1.A1_s_at

Description gb:CB631849
DB_XREF= gi:29626838
DB_XREF=OSIIEb09K21.r
CLONE=OSIIEb09K21
TID=Os.17190.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17190 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45718 (A.thaliana) T45718 receptor-kinase like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3615011/11receptor kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36110OsAffx.8923.1.S1_at7/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.47999.3.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.51887.1.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36120OsAffx.7311.1.S1_at11/1111+20731323..20733951Leucine Rich Repeat family protein
LOC_Os11g36130OsAffx.19183.1.S1_at11/1111+20739476..20740428hypothetical protein
LOC_Os11g36140OsAffx.7312.1.S1_at11/1111+20742087..20745499Leucine Rich Repeat family protein, expressed
LOC_Os11g36150Os.20861.1.S1_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36150Os.17190.1.A1_s_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36160Os.26792.1.S1_at11/1111+20759800..20764523receptor kinase, putative, expressed
LOC_Os11g36170OsAffx.19184.1.S1_at11/1111+20768969..20770330hypothetical protein
LOC_Os11g36180OsAffx.31320.1.S1_at11/1111+20772217..20776127Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17190.1.A1_s_at--578--8191Chr11:20750147..20750171 (25 bp)
GGAAGAGGCCCATCGATAACAAATC
LOC_Os11g36150
Os.17190.1.A1_s_at--726--6211Chr11:20750143..20750167 (25 bp)
GAGGCCCATCGATAACAAATCCATA
LOC_Os11g36150
Os.17190.1.A1_s_at--437--8411Chr11:20750141..20750165 (25 bp)
GGCCCATCGATAACAAATCCATACA
LOC_Os11g36150
Os.17190.1.A1_s_at--265--3531Chr11:20750137..20750161 (25 bp)
CATCGATAACAAATCCATACAAGGA
LOC_Os11g36150
Os.17190.1.A1_s_at--799--10691Chr11:20749713..20749737 (25 bp)
TTGCCATGCAGTTGTAATCATGCCT
LOC_Os11g36150
Os.17190.1.A1_s_at--551--4431Chr11:20749711..20749735 (25 bp)
GCCATGCAGTTGTAATCATGCCTGT
LOC_Os11g36150
Os.17190.1.A1_s_at--810--5031Chr11:20749706..20749730 (25 bp)
GCAGTTGTAATCATGCCTGTAAACA
LOC_Os11g36150
Os.17190.1.A1_s_at--936--9751Chr11:20749699..20749723 (25 bp)
TAATCATGCCTGTAAACATATCCGT
LOC_Os11g36150
Os.17190.1.A1_s_at--23--5531Chr11:20749653..20749677 (25 bp)
GAAAAGCATTTTTCCAGTCATGTAC
LOC_Os11g36150
Os.17190.1.A1_s_at--980--1531Chr11:20749649..20749673 (25 bp)
AGCATTTTTCCAGTCATGTACTTTG
LOC_Os11g36150
Os.17190.1.A1_s_at--233--3591Chr11:20749647..20749671 (25 bp)
CATTTTTCCAGTCATGTACTTTGTC
LOC_Os11g36150
Target Sequence 
GGAAGAGGCCCATCGATAACAAATCCATACAAGGATTGACCCTCCGTGAGTATGTTGAGCTGGGTTTACATGGTAAAATG
ATGGATGTTGTTGACCCCCAGCTGTTTTTGGGACTTGAGAATGAATTTCATACCGCTGACGATTTTTCATGCAAAGGAAG
GATCGATTGCTTGGTTTCATTACTCAGGCTTGGACTGTATTGCTNTCAGGAAATGCCGTCGAATAGAATGTCAACTGGAG
ATATTATTAAGGAATTGATTGCAATCAAACNATCCCTTGTAGGGAACNCATAATATATNTTCGAGCTGAATGACNCAGTT
TGGAGCTCATTCCTTGGGNGTTCATTTNTTACCCTTTCATNCCTTGTTGGTTTATGCATAGTACNCTGAAGTATACTGTT
ATCNCTTGGGATTTGGACATNTGAGTGCAAAAACTGATTGCCATGCAGTTGTAATCATGCCTGTAAACATATCCGTAATT
TATGTTNTTTTGCTAGGAAAAGCATTTTTCCAGTCATGTACTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17190.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis