Browse Element(s) Details


OsAffx.19183.1.S1_at

Description tigr:9639.m03254
TID=OsAffx.19183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3613011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36090OsAffx.7310.1.S1_at11/1111+20709395..20714997Leucine Rich Repeat family protein, expressed
LOC_Os11g36100NANA11+20723486..20723908retrotransposon protein, putative, unclassified
LOC_Os11g36110OsAffx.8923.1.S1_at7/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.47999.3.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36110Os.51887.1.S1_x_at1/1111+20725883..20730970retrotransposon protein, putative, unclassified
LOC_Os11g36120OsAffx.7311.1.S1_at11/1111+20731323..20733951Leucine Rich Repeat family protein
LOC_Os11g36130OsAffx.19183.1.S1_at11/1111+20739476..20740428hypothetical protein
LOC_Os11g36140OsAffx.7312.1.S1_at11/1111+20742087..20745499Leucine Rich Repeat family protein, expressed
LOC_Os11g36150Os.20861.1.S1_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36150Os.17190.1.A1_s_at11/1111+20749601..20753367receptor kinase, putative, expressed
LOC_Os11g36160Os.26792.1.S1_at11/1111+20759800..20764523receptor kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19183.1.S1_at--920--4951Chr11:20740373..20740397 (25 bp)
GCATCACTTTGCTTTTTAGCCCTAA
LOC_Os11g36130
OsAffx.19183.1.S1_at--1030--10311Chr11:20740359..20740383 (25 bp)
TTTAGCCCTAAGAAGCCCGAGGAAT
LOC_Os11g36130
OsAffx.19183.1.S1_at--835--5231Chr11:20740338..20740362 (25 bp)
GAATCAAAGATTCCAATTCCAAAGG
LOC_Os11g36130
OsAffx.19183.1.S1_at--138--91Chr11:20740323..20740347 (25 bp)
ATTCCAAAGGAAGTGATCGATCATT
LOC_Os11g36130
OsAffx.19183.1.S1_at--711--7391Chr11:20740315..20740335 (21 bp)
GTGATCGATCATTTCATAAAGCATT
LOC_Os11g36130
OsAffx.19183.1.S1_at--1098--2331Chr11:20739629..20739650 (22 bp)
AAAGCATTGCTCTTTTGAATGTCAA
LOC_Os11g36130
OsAffx.19183.1.S1_at--848--3651Chr11:20739595..20739619 (25 bp)
CTTAAGATTGCTTTTCTTTACCCAG
LOC_Os11g36130
OsAffx.19183.1.S1_at--208--10471Chr11:20739578..20739602 (25 bp)
TTACCCAGTGGTTGTGAACTTCGAT
LOC_Os11g36130
OsAffx.19183.1.S1_at--642--8971Chr11:20739564..20739588 (25 bp)
TGAACTTCGATAGGCAATTGTCCAA
LOC_Os11g36130
OsAffx.19183.1.S1_at--1042--5391Chr11:20739538..20739562 (25 bp)
GAAGCTGAAATCGAGAACTATCACT
LOC_Os11g36130
OsAffx.19183.1.S1_at--903--1431Chr11:20739525..20739549 (25 bp)
AGAACTATCACTTGGACGCCCTCAT
LOC_Os11g36130
Target Sequence 
GCATCACTTTGCTTTTTAGCCCTAAGAAGCCCGAGGAATCAAAGATTCCAATTCCAAAGGAAGTGATCGATCATTTCATA
AAGCATTGCTCTTTTGAATGTCAAAGCAAAAACCTTAAGATTGCTTTTCTTTACCCAGTGGTTGTGAACTTCGATAGGCA
ATTGTCCAAAGAAGCTGAAATCGAGAACTATCACTTGGACGCCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis