Browse Element(s) Details


Os.40177.1.S1_at

Description gb:CF330389
DB_XREF= gi:33809009
DB_XREF=NACL--06-B08.g1
CLONE=NACL--06-B08
TID=Os.40177.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40177 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0235011/11receptor-like kinase ARK1AS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40177.1.S1_at--1123--7271Chr01:739623..739647 (25 bp)
GTGGTAAGTAAGTTGTAAAACGCTG
LOC_Os01g02350
Os.40177.1.S1_at--845--8731Chr01:739610..739634 (25 bp)
TGTAAAACGCTGAGGGATATGTTCC
LOC_Os01g02350
Os.40177.1.S1_at--628--2371Chr01:739606..739630 (25 bp)
AAACGCTGAGGGATATGTTCCCTTG
LOC_Os01g02350
Os.40177.1.S1_at--848--4711Chr01:739602..739626 (25 bp)
GCTGAGGGATATGTTCCCTTGGCAT
LOC_Os01g02350
Os.40177.1.S1_at--811--6131Chr01:739599..739623 (25 bp)
GAGGGATATGTTCCCTTGGCATTGT
LOC_Os01g02350
Os.40177.1.S1_at--443--7671Chr01:739597..739621 (25 bp)
GGGATATGTTCCCTTGGCATTGTTG
LOC_Os01g02350
Os.40177.1.S1_at--344--6511Chr01:739595..739619 (25 bp)
GATATGTTCCCTTGGCATTGTTGAA
LOC_Os01g02350
Os.40177.1.S1_at--502--271Chr01:739594..739618 (25 bp)
ATATGTTCCCTTGGCATTGTTGAAA
LOC_Os01g02350
Os.40177.1.S1_at--448--8291Chr01:739582..739606 (25 bp)
GGCATTGTTGAAATTTGGAGGTTAT
LOC_Os01g02350
Os.40177.1.S1_at--31--8551Chr01:739567..739591 (25 bp)
TGGAGGTTATCTTGTTTTAGGGAAT
LOC_Os01g02350
Os.40177.1.S1_at--468--2471Chr01:739542..739566 (25 bp)
AACAGAGTATAAAGCAGGAGCAAGA
LOC_Os01g02350
Target Sequence 
GTGGTAAGTAAGTTGTAAAACGCTGAGGGATATGTTCCCTTGGCATTGTTGAAATTTGGAGGTTATCTTGTTTTAGGGAA
TAACAGAGTATAAAGCAGGAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis