Browse Element(s) Details


OsAffx.23090.9.S1_x_at

Description tigr:9629.m00191
TID=OsAffx.23090.9
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0279011/11receptor kinase LRK14, putative, expressed
LOC_Os01g028108/11receptor kinase LRK14, putative
LOC_Os01g027706/11YRK1, putative, expressed
LOC_Os01g028404/11LRK14, putative
LOC_Os01g027503/11receptor kinase LRK14, putative
LOC_Os06g381001/11Protein kinase domain containing protein
LOC_Os01g022901/11Ser/Thr receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified
LOC_Os01g02750OsAffx.23090.3.S1_x_at5/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.2.S1_x_at4/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.9.S1_x_at3/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.4.S1_x_at2/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.8676.1.S1_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.1.S1_x_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23090.9.S1_x_at--751--331Chr01:976678..976702 (25 bp)
ATACTTGCATCAAGGGTGTAACCAG
LOC_Os01g02790
OsAffx.23090.9.S1_x_at--915--7432Chr01:976693..976717 (25 bp)
GTGTAACCAGCGTATCCTCCATTTC
LOC_Os01g02790
OsAffx.23090.9.S1_x_at--284--2515Chr01:997272..997296 (25 bp)
AACATCTTGCTGGACTATAACTTCA
LOC_Os01g02840
OsAffx.23090.9.S1_x_at--1078--1397Chr06:22536894..22536914 (21 bp)
AGACTTTGGCCTTGCAAAGCTGTGT
LOC_Os06g38100
OsAffx.23090.9.S1_x_at--326--7971Chr01:976947..976971 (25 bp)
GGAGGAACTCGGACCCAAGTGTTGA
LOC_Os01g02790
OsAffx.23090.9.S1_x_at--154--5852Chr01:976972..976996 (25 bp)
GAGCCAAAACGTGGTCTACTTCCCA
LOC_Os01g02790
OsAffx.23090.9.S1_x_at--867--2493Chr01:987234..987258 (25 bp)
AACAGTGGGCAGGATTTGGCACTTG
LOC_Os01g02810
OsAffx.23090.9.S1_x_at--570--10733Chr01:987249..987273 (25 bp)
TTGGCACTTGGTAGGGAAATGACAC
LOC_Os01g02810
OsAffx.23090.9.S1_x_at--97--2572Chr01:977071..977095 (25 bp)
AACGGTCAGACAGCTAGCCATTGTG
LOC_Os01g02790
OsAffx.23090.9.S1_x_at--694--2895Chr01:997683..997707 (25 bp)
AAGGTGGTGAACATGCTAACAGGGA
LOC_Os01g02840
OsAffx.23090.9.S1_x_at--84--8034Chr01:997705..997729 (25 bp)
GGAGGTTGCAGAATCTACAGGTGCC
LOC_Os01g02840
Target Sequence 
ATACTTGCATCAAGGGTGTAACCAGCGTATCCTCCATTTCGATATCAAGCCTCATAACATCTTGCTGGACTATAACTTCA
GTCCGAAGATTTCAGACTTTGGCCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATTGTTACCTTGACTGCAGCAAGAGGC
ACAATGGGCTATATTGCACCAGAGCTATATTCTCGGAACTTTGGAGAGATATCTTACAAGTCAGATGTTTATAGTTTTGG
CATGCTGGTATTAGAAATGGTTAGCGGAAGGAGGAACTCGGACCCAAGTGTTGAGAGCCAAAACGTGGTCTACTTCCCAG
AATGGATCTATGAACAGGTAAACAGTGGGCAGGATTTGGCACTTGGTAGGGAAATGACACAAGAAGAGAAAGAAACGGTC
AGACAGCTAGCCATTGTGGCACTATGGTGCATTCAGTGGAACCCAAAGAACCGGCCATCAATGACAAAGGTGGTGAACAT
GCTAACAGGGAGGTTGCAGAATCTACAGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23090.9.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis