Browse Element(s) Details


Os.47312.1.A1_x_at

Description gb:NM_184099.1
DB_XREF= gi:34895291
GEN=P0698G03.22
TID=Os.47312.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47312 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0698G03.22), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0277011/11YRK1, putative, expressed
LOC_Os01g027901/11receptor kinase LRK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified
LOC_Os01g02750OsAffx.23090.3.S1_x_at5/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.2.S1_x_at4/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.9.S1_x_at3/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.4.S1_x_at2/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.8676.1.S1_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.1.S1_x_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47312.1.A1_x_at--889--311Chr01:958926..958950 (25 bp)
ATACGATACCTACTATGCAGCACTA
LOC_Os01g02770
Os.47312.1.A1_x_at--166--2151Chr01:958963..958987 (25 bp)
ACAGAATTTGCCCTAGCTAGTGTCC
LOC_Os01g02770
Os.47312.1.A1_x_at--121--8251Chr01:958990..959014 (25 bp)
GGCACTGCCACCGATAACGATTATA
LOC_Os01g02770
Os.47312.1.A1_x_at--512--9812Chr01:959004..959028 (25 bp)
TAACGATTATATTGCTGGCCCCATC
LOC_Os01g02770
Os.47312.1.A1_x_at--93--3811Chr01:959055..959079 (25 bp)
CTCCTATTTGGTGGCTTATCGTGTA
LOC_Os01g02770
Os.47312.1.A1_x_at--1117--491Chr01:959072..959096 (25 bp)
ATCGTGTAACTATGTCTCTTCTTCC
LOC_Os01g02770
Os.47312.1.A1_x_at--957--7871Chr01:959155..959179 (25 bp)
GGTTATATCCCATCCATGTTCACAA
LOC_Os01g02770
Os.47312.1.A1_x_at--1098--7331Chr01:959183..959207 (25 bp)
GTGCAGACAGAATCCTCGACTATCC
LOC_Os01g02770
Os.47312.1.A1_x_at--785--7871Chr01:959212..959236 (25 bp)
GGTTATGTCTTATCCACGTTCAGAG
LOC_Os01g02770
Os.47312.1.A1_x_at--958--10031Chr01:959373..959397 (25 bp)
TAGAGGTATTATTTCTTACTGGCCA
LOC_Os01g02770
Os.47312.1.A1_x_at--431--10431Chr01:959388..959412 (25 bp)
TTACTGGCCAAACAACTACTCCTAT
LOC_Os01g02770
Target Sequence 
ATACGATACCTACTATGCAGCACTAGTAAGCTGTTCAACAGAATTTGCCCTAGCTAGTGTCCCTGGCACTGCCACCGATA
ACGATTATATTGCTGGCCCCATCTCTTGCCTTAGCAACCAAACCCACTTCTCCTATTTGGTGGCTTATCGTGTAACTATG
TCTCTTCTTCCGTTGGACTGCGAGGTCATCTCAGATGGCCCCATTCCGATACCAGCTTTTTATTACTCCGGTTATATCCC
ATCCATGTTCACAACAAGTGCAGACAGAATCCTCGACTATCCTTCCGGTTATGTCTTATCCACGTTCAGAGAAAGTGCAG
AAAGAATCCTCAATTCTTCTGAGACCATGATCTGGTGGTATTTCTACAAGTACGATGGCAGACATTGTGAACAACAAGGC
CGACGCTGCGCATTCAGCTCACAAAGGAATCAAACATTCTGCATGGGTAGAGGTATTATTTCTTACTGGCCAAACAACTA
CTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47312.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis