Browse Element(s) Details


Os.45516.1.S1_at

Description gb:AK120089.1
DB_XREF= gi:37989712
TID=Os.45516.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (P0698G03.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020P18, full insert sequence.
FL= gb:AK120089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0278011/11TAK33, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified
LOC_Os01g02750OsAffx.23090.3.S1_x_at5/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.2.S1_x_at4/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.9.S1_x_at3/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.4.S1_x_at2/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.8676.1.S1_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.1.S1_x_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45516.1.S1_at--790--1191Chr01:966273..966297 (25 bp)
AGTATTTGAATCTAGCAATTAGCGT
LOC_Os01g02780
Os.45516.1.S1_at--310--5191Chr01:966259..966283 (25 bp)
GCAATTAGCGTTCACTAATATTAAT
LOC_Os01g02780
Os.45516.1.S1_at--753--8551Chr01:966223..966247 (25 bp)
TGGAGTACAAGACCATTGTAAGCTA
LOC_Os01g02780
Os.45516.1.S1_at--322--2771Chr01:966215..966239 (25 bp)
AAGACCATTGTAAGCTAGTCCAGCT
LOC_Os01g02780
Os.45516.1.S1_at--178--1571Chr01:966203..966227 (25 bp)
AGCTAGTCCAGCTTGAACTTATTTA
LOC_Os01g02780
Os.45516.1.S1_at--594--7271Chr01:966198..966222 (25 bp)
GTCCAGCTTGAACTTATTTACCTAG
LOC_Os01g02780
Os.45516.1.S1_at--747--10751Chr01:966191..966215 (25 bp)
TTGAACTTATTTACCTAGCAGATTG
LOC_Os01g02780
Os.45516.1.S1_at--1149--5471Chr01:966189..966213 (25 bp)
GAACTTATTTACCTAGCAGATTGAA
LOC_Os01g02780
Os.45516.1.S1_at--499--1731Chr01:966179..966203 (25 bp)
ACCTAGCAGATTGAAGTTGTTTTAC
LOC_Os01g02780
Os.45516.1.S1_at--859--9931Chr01:966157..966181 (25 bp)
TACGTGTATGTAAAATGACTATGAA
LOC_Os01g02780
Os.45516.1.S1_at--1144--2971Chr01:966144..966168 (25 bp)
AATGACTATGAATAAACTACTCCCC
LOC_Os01g02780
Target Sequence 
AGTATTTGAATCTAGCAATTAGCGTTCACTAATATTAATTTTACACTAGATGGAGTACAAGACCATTGTAAGCTAGTCCA
GCTTGAACTTATTTACCTAGCAGATTGAAGTTGTTTTACGTGTATGTAAAATGACTATGAATAAACTACTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis