Browse Element(s) Details


Os.35772.1.S1_at

Description gb:AK065867.1
DB_XREF= gi:32975885
TID=Os.35772.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (P0698G03.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044O08, full insert sequence.
FL= gb:AK065867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0283011/11receptor-like kinase ARK1AS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02880Os.1981.1.S1_at11/111+1012867..1016297Fructose-bisphosphate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35772.1.S1_at--632--9872Chr01:991654..991678 (25 bp)
TACTTAATTTGTATGCCCGTTTTGC
LOC_Os01g02830
Os.35772.1.S1_at--483--10811Chr01:991646..991670 (25 bp)
TTGTATGCCCGTTTTGCTGTCTAAA
LOC_Os01g02830
Os.35772.1.S1_at--286--591Chr01:991642..991666 (25 bp)
ATGCCCGTTTTGCTGTCTAAAGTTC
LOC_Os01g02830
Os.35772.1.S1_at--264--4451Chr01:991640..991664 (25 bp)
GCCCGTTTTGCTGTCTAAAGTTCAA
LOC_Os01g02830
Os.35772.1.S1_at--210--9111Chr01:991632..991656 (25 bp)
TGCTGTCTAAAGTTCAAATATGCTG
LOC_Os01g02830
Os.35772.1.S1_at--116--2831Chr01:991623..991647 (25 bp)
AAGTTCAAATATGCTGAGATCGATA
LOC_Os01g02830
Os.35772.1.S1_at--1068--4732Chr01:991611..991635 (25 bp)
GCTGAGATCGATATAGTTTTTATGT
LOC_Os01g02830
Os.35772.1.S1_at--1101--10091Chr01:991591..991615 (25 bp)
TATGTTTATTGTAAGTTTGTAGCAC
LOC_Os01g02830
Os.35772.1.S1_at--902--6111Chr01:991535..991559 (25 bp)
GAGTGTATGCTTAATCTCCACAAGA
LOC_Os01g02830
Os.35772.1.S1_at--816--6891Chr01:991531..991555 (25 bp)
GTATGCTTAATCTCCACAAGACAGT
LOC_Os01g02830
Os.35772.1.S1_at--233--471Chr01:991522..991546 (25 bp)
ATCTCCACAAGACAGTATTATGAAT
LOC_Os01g02830
Target Sequence 
TACTTAATTTGTATGCCCGTTTTGCTGTCTAAAGTTCAAATATGCTGAGATCGATATAGTTTTTATGTTTATTGTAAGTT
TGTAGCACATATAATAAAGTGAGAGCTTGTAATATTTAGGAGTGTATGCTTAATCTCCACAAGACAGTATTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis