Browse Element(s) Details


Os.15390.1.S1_s_at

Description gb:CR284643
DB_XREF= gi:44671209
DB_XREF=CR284643
CLONE=y791e05p3
TID=Os.15390.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15390 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565111.1 (A.thaliana) nodulin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0287011/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02880Os.1981.1.S1_at11/111+1012867..1016297Fructose-bisphosphate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15390.1.S1_s_at--535--4171Chr01:1008598..1008622 (25 bp)
CGCCATCATTCTCGGAGATCAGCTA
LOC_Os01g02870
Os.15390.1.S1_s_at--950--6031Chr01:1008612..1008634 (23 bp)
GAGATCAGCTATACTCAGGAGGGAT
LOC_Os01g02870
Os.15390.1.S1_s_at--256--1291Chr01:1008886..1008910 (25 bp)
AGATGCATCTCGCAAAGACGAAGAA
LOC_Os01g02870
Os.15390.1.S1_s_at--630--1851Chr01:1008903..1008927 (25 bp)
ACGAAGAAGCTGCAGTCACTGATGA
LOC_Os01g02870
Os.15390.1.S1_s_at--801--8851Chr01:1008922..1008946 (25 bp)
TGATGAACTGGCATGACGATCGATC
LOC_Os01g02870
Os.15390.1.S1_s_at--446--7571Chr01:1008951..1008975 (25 bp)
GGGCGTTCTTCACCAGTAATATGCA
LOC_Os01g02870
Os.15390.1.S1_s_at--579--731Chr01:1008999..1009023 (25 bp)
ATGTTGATGTCAGTGACTGTACTTT
LOC_Os01g02870
Os.15390.1.S1_s_at--780--5351Chr01:1009046..1009070 (25 bp)
GAAGATCCAAGCGTGCCAGTGTAAT
LOC_Os01g02870
Os.15390.1.S1_s_at--403--2131Chr01:1009076..1009100 (25 bp)
ACAGTACTGCTAGCTGGTCCTCACT
LOC_Os01g02870
Os.15390.1.S1_s_at--128--8612Chr01:1009090..1009114 (25 bp)
TGGTCCTCACTCACCAGTGATATAC
LOC_Os01g02870
Os.15390.1.S1_s_at--679--7431Chr01:1009141..1009165 (25 bp)
GTGTATATCTCAAGCTGTATATTCA
LOC_Os01g02870
Target Sequence 
CGCCATCATTCTCGGAGATCAGCTATACTCAGGAGGGATCATCGGANCAGTTCTGATTGTGATCGGNCTGTACTTCGTGC
TGTGGGGCAAAAGCGAGGAGAAGAAGAGCAAGAACAATCTGCAGGACCAGTCATCGGTGCAGGGAGGAGGAGGAGACGAC
ATCAGGAGGCATCTGCTCGGGCAAGAAGATGCATCTCGCAAAGACGAAGAAGCTGCAGTCACTGATGAACTGGCATGACG
ATCGATCGAGCTGAGGGGCGTTCTTCACCAGTAATATGCATGATGATGTTGGAGTTGGAAAATATATGTTGATGTCAGTG
ACTGTACTTTTCTTAACTATGTTAATCAAAGAAGAAGATCCAAGCGTGCCAGTGTAATTAAAANACAGTACTGCTAGCTG
GTCCTCACTCACCAGTGATATACTATATATAATTGCTACGAATCANTNTGTGTATATCTCAAGCTGTATATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15390.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis