Browse Element(s) Details


Os.1981.1.S1_at

Description gb:AK099387.1
DB_XREF= gi:32984596
TID=Os.1981.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative fructose-bisphosphate aldolase (P0494A10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075H15, full insert sequence.
FL= gb:AK059097.1 gb:AK099387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0288011/11Fructose-bisphosphate aldolase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02880Os.1981.1.S1_at11/111+1012867..1016297Fructose-bisphosphate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006098biological_processpentose-phosphate shunt
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1981.1.S1_at--636--3071Chr01:1015656..1015787 (25 bp)
AATCATGTTCCTTTCTGGTGGGCAA
LOC_Os01g02880
Os.1981.1.S1_at--921--2371Chr01:1015835..1015859 (25 bp)
AAACCCATGGCATGTGTCCTTCTCA
LOC_Os01g02880
Os.1981.1.S1_at--54--8331Chr01:1015868..1015892 (25 bp)
GGCTCTCCAGAACTCGGTGCTGAAG
LOC_Os01g02880
Os.1981.1.S1_at--111--1091Chr01:1016032..1016056 (25 bp)
AGGGCTACACTTACTGATGCGGCAG
LOC_Os01g02880
Os.1981.1.S1_at--500--5991Chr01:1016059..1016083 (25 bp)
GAGACTTCCGTGATATACAACATGC
LOC_Os01g02880
Os.1981.1.S1_at--25--2211Chr01:1016075..1016099 (25 bp)
ACAACATGCCATTTCGTGTCACTGT
LOC_Os01g02880
Os.1981.1.S1_at--48--7111Chr01:1016092..1016116 (25 bp)
GTCACTGTTTTTTGAACACCGGAGT
LOC_Os01g02880
Os.1981.1.S1_at--710--7771Chr01:1016139..1016163 (25 bp)
GGTGCCACCGATTGTTGTTAGCTTC
LOC_Os01g02880
Os.1981.1.S1_at--999--5891Chr01:1016187..1016211 (25 bp)
GAGCTGTATCTGACTCTGAAACACA
LOC_Os01g02880
Os.1981.1.S1_at--1162--1951Chr01:1016233..1016257 (25 bp)
ACTGTAAGCATATGCCTTTCGGCCA
LOC_Os01g02880
Os.1981.1.S1_at--610--4451Chr01:1016246..1016270 (25 bp)
GCCTTTCGGCCATGAGACTGTGAGA
LOC_Os01g02880
Target Sequence 
AATCATGTTCCTTTCTGGTGGGCAATCTGAGGTGGAGGCAACCCTGAACCTGAACGCGATGAACCAAGAACCAAACCCAT
GGCATGTGTCCTTCTCATACGCCCGGGCTCTCCAGAACTCGGTGCTGAAGACATGGCAGGGGCGCCCCGAGAACGTGGAG
GCAGCGCAGAAGGCACTGCTGGTCCGTGCCAAGGCGAACTCGCTGGCTCAGCTCGGTCGCTACACCGGCGAGGGCGAGAG
CGATGAGGCCAAGAAGGGAATGTTCCAGAAGGGCTACACTTACTGATGCGGCAGAAGAGACTTCCGTGATATACAACATG
CCATTTCGTGTCACTGTTTTTTGAACACCGGAGTGAATAATCACCAGAGTATGTTTGGTGCCACCGATTGTTGTTAGCTT
CGTTAGCACGGGAGAAACCTTAGAGAGCTGTATCTGACTCTGAAACACACTATTTTGATAGCACGCTTTTACTGTAAGCA
TATGCCTTTCGGCCATGAGACTGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis