Browse Element(s) Details


OsAffx.23090.3.S1_x_at

Description tigr:9629.m00196
TID=OsAffx.23090.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0284011/11LRK14, putative
LOC_Os01g027706/11YRK1, putative, expressed
LOC_Os01g028106/11receptor kinase LRK14, putative
LOC_Os01g027905/11receptor kinase LRK14, putative, expressed
LOC_Os01g027505/11receptor kinase LRK14, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02880Os.1981.1.S1_at11/111+1012867..1016297Fructose-bisphosphate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23090.3.S1_x_at--286--2515Chr01:997272..997296 (25 bp)
AACATCTTGCTGGACTATAACTTCA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--872--135Chr01:997353..997377 (25 bp)
ATTACCTTGACTGCAGCAAGAGGCA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--309--1291Chr01:997397..997421 (25 bp)
AGAGCTATACTCTCGGAACTTTGGA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--410--8014Chr01:997486..997510 (25 bp)
GGAGGAACTCAGACCCAAGTGTTGA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--377--7091Chr01:997513..997537 (25 bp)
GTCAAAATGTGGTCTATTTCCCAGA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--72--7971Chr01:997540..997564 (25 bp)
GGATCTATGAGCAGGTTACCATTGG
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--361--9971Chr01:997556..997580 (25 bp)
TACCATTGGGCAGGATTTAGAACTT
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--1149--2992Chr01:997613..997637 (25 bp)
AATGAGACAGCTGGCCATTGTGGCA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--159--1775Chr01:997666..997690 (25 bp)
ACCGGCCATCAATGACAAAGGTGGT
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--695--2895Chr01:997683..997707 (25 bp)
AAGGTGGTGAACATGCTAACAGGGA
LOC_Os01g02840
OsAffx.23090.3.S1_x_at--82--8034Chr01:997705..997729 (25 bp)
GGAGGTTGCAGAATCTACAGGTGCC
LOC_Os01g02840
Target Sequence 
AACATCTTGCTGGACTATAACTTCAGCCCGAAGATTTCAGACTTTGGCCTTGCAAAGCTGTGTGCAAGGGACCAAAGCAT
CATTACCTTGACTGCAGCAAGAGGCACGATGGGCTATATTGCACCAGAGCTATACTCTCGGAACTTTGGAGAGATATCTT
ACAAGTCAGATGTTTATAGTTTCGGCATGCTGGTGTTAGAAATGGTTAGCGGAAGGAGGAACTCAGACCCAAGTGTTGAA
AGTCAAAATGTGGTCTATTTCCCAGAATGGATCTATGAGCAGGTTACCATTGGGCAGGATTTAGAACTTGGTAGGGAAAT
GACTGAAGAAGAGAAAGCAATAATGAGACAGCTGGCCATTGTGGCACTGTGGTGCATTCAGTGGAACCCAAAGAACCGGC
CATCAATGACAAAGGTGGTGAACATGCTAACAGGGAGGTTGCAGAATCTACAGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23090.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis