Browse Element(s) Details


Os.35772.3.S1_at

Description gb:NM_184105.1
DB_XREF= gi:34895303
GEN=P0698G03.28
TID=Os.35772.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35772 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0698G03.28), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0280011/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35772.3.S1_at--989--631Chr01:981461..981485 (25 bp)
ATGCTTGAAGGTGGTACCGATGAAC
LOC_Os01g02800
Os.35772.3.S1_at--302--3611Chr01:981458..981482 (25 bp)
CTTGAAGGTGGTACCGATGAACTGC
LOC_Os01g02800
Os.35772.3.S1_at--463--5311Chr01:981455..981479 (25 bp)
GAAGGTGGTACCGATGAACTGCAAG
LOC_Os01g02800
Os.35772.3.S1_at--73--2891Chr01:981454..981478 (25 bp)
AAGGTGGTACCGATGAACTGCAAGT
LOC_Os01g02800
Os.35772.3.S1_at--552--1051Chr01:981453..981477 (25 bp)
AGGTGGTACCGATGAACTGCAAGTT
LOC_Os01g02800
Os.35772.3.S1_at--763--7731Chr01:981452..981476 (25 bp)
GGTGGTACCGATGAACTGCAAGTTC
LOC_Os01g02800
Os.35772.3.S1_at--1011--7491Chr01:981451..981475 (25 bp)
GTGGTACCGATGAACTGCAAGTTCC
LOC_Os01g02800
Os.35772.3.S1_at--1125--7831Chr01:981449..981473 (25 bp)
GGTACCGATGAACTGCAAGTTCCTC
LOC_Os01g02800
Os.35772.3.S1_at--272--6991Chr01:981448..981472 (25 bp)
GTACCGATGAACTGCAAGTTCCTCC
LOC_Os01g02800
Os.35772.3.S1_at--376--1791Chr01:981446..981470 (25 bp)
ACCGATGAACTGCAAGTTCCTCCAA
LOC_Os01g02800
Os.35772.3.S1_at--773--4231Chr01:981445..981469 (25 bp)
CCGATGAACTGCAAGTTCCTCCAAG
LOC_Os01g02800
Target Sequence 
ATGCTTGAAGGTGGTACCGATGAACTGCAAGTTCCTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35772.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis