Browse Element(s) Details


Os.27046.1.S1_at

Description gb:AK111565.1
DB_XREF= gi:37988228
TID=Os.27046.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like kinase (OSJNBb0032H19.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071F06, full insert sequence.
FL= gb:AK111565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0230010/11receptor kinase ORK10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27046.1.S1_at--274--6171Chr01:722676..722700 (25 bp)
GAGGATGACTGAAGCAAACTAGGAT
LOC_Os01g02300
Os.27046.1.S1_at--1--1011Chr01:722696..722720 (25 bp)
AGGATAGCGACTTGACATTCCTGCC
LOC_Os01g02300
Os.27046.1.S1_at--965--2071Chr01:722710..722734 (25 bp)
ACATTCCTGCCCACGTATATATTCA
LOC_Os01g02300
Os.27046.1.S1_at--384--6891Chr01:722724..722748 (25 bp)
GTATATATTCAGTTCGTGCCCTGCT
LOC_Os01g02300
Os.27046.1.S1_at--370--131Chr01:722883..722907 (25 bp)
ATTCAGTTCGTGCTTATACAACAGG
LOC_Os01g02300
Os.27046.1.S1_at--1111--7651Chr01:722907..722931 (25 bp)
GGGATGTTTCTTGACTCTTGTAGAG
LOC_Os01g02300
Os.27046.1.S1_at--188--5711Chr01:722959..722983 (25 bp)
GACTAAGAAGAATTCCTCGTTGATA
LOC_Os01g02300
Os.27046.1.S1_at--1002--10371NONE
TTTTCAGGTTGCTAGATTGTTCATC
NONE
Os.27046.1.S1_at--1005--6591Chr01:723003..723022 (20 bp)
GATTGTTCATCAGTACACGACCCTG
LOC_Os01g02300
Os.27046.1.S1_at--207--3351Chr01:723013..723037 (25 bp)
CACGACCCTGATTGTACTGCATAAA
LOC_Os01g02300
Os.27046.1.S1_at--676--10771Chr01:723061..723085 (25 bp)
TTGATTGATGGACTTTGACCTGACC
LOC_Os01g02300
Target Sequence 
GAGGATGACTGAAGCAAACTAGGATAGCGACTTGACATTCCTGCCCACGTATATATTCAGTTCGTGCCCTGCTTTTTGCC
TCNNCTTTTTGCGGGTTATTTGTTTCGCTTTTTTTCATCTANCCCTGTATATATCTNGCTATAATTTTCTCCTGCTCTAT
TAATATATACAAGGCAAAGCTTTTGCCTTCCTTTAAAAAAAATATATATTCAGTTCGTGCTTATACAACAGGGGATGTTT
CTTGACTCTTGTAGAGGTATGAGGTTAATATGAAGATTAGTAGGACTAAGAAGAATTCCTCGTTGATATTTTCAGGTTGC
TAGATTGTTCATCAGTACACGACCCTGATTGTACTGCATAAAAAGGAAGTAATAATATAGGAGTTTTGATTGATGGACTT
TGACCTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis