Browse Element(s) Details


OsAffx.10878.1.S1_at

Description gb:NM_183556.1
DB_XREF= gi:34894239
GEN=OSJNBb0032H19.24
TID=OsAffx.10878.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative receptor serinethreonine kinase (OSJNBb0032H19.24), mRNA.
PROD=putative receptor serinethreonine kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0231011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10878.1.S1_at--928--9791Chr01:727658..727682 (25 bp)
TAAGCTTTGGTTTTACTGCAGTTGT
LOC_Os01g02310
OsAffx.10878.1.S1_at--1100--2691Chr01:727659..727683 (25 bp)
AAGCTTTGGTTTTACTGCAGTTGTG
LOC_Os01g02310
OsAffx.10878.1.S1_at--145--1571Chr01:727660..727684 (25 bp)
AGCTTTGGTTTTACTGCAGTTGTGG
LOC_Os01g02310
OsAffx.10878.1.S1_at--430--3691Chr01:727662..727686 (25 bp)
CTTTGGTTTTACTGCAGTTGTGGGC
LOC_Os01g02310
OsAffx.10878.1.S1_at--651--10231Chr01:727663..727687 (25 bp)
TTTGGTTTTACTGCAGTTGTGGGCT
LOC_Os01g02310
OsAffx.10878.1.S1_at--275--10851Chr01:727664..727688 (25 bp)
TTGGTTTTACTGCAGTTGTGGGCTC
LOC_Os01g02310
OsAffx.10878.1.S1_at--210--8571Chr01:727665..727689 (25 bp)
TGGTTTTACTGCAGTTGTGGGCTCA
LOC_Os01g02310
OsAffx.10878.1.S1_at--947--7871Chr01:727666..727690 (25 bp)
GGTTTTACTGCAGTTGTGGGCTCAG
LOC_Os01g02310
OsAffx.10878.1.S1_at--701--6811Chr01:727667..727691 (25 bp)
GTTTTACTGCAGTTGTGGGCTCAGC
LOC_Os01g02310
OsAffx.10878.1.S1_at--385--10351Chr01:727668..727692 (25 bp)
TTTTACTGCAGTTGTGGGCTCAGCT
LOC_Os01g02310
OsAffx.10878.1.S1_at--144--10351Chr01:727669..727693 (25 bp)
TTTACTGCAGTTGTGGGCTCAGCTC
LOC_Os01g02310
Target Sequence 
TAAGCTTTGGTTTTACTGCAGTTGTGGGCTCAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis