Browse Element(s) Details


Os.48023.1.A1_at

Description gb:NM_184063.1
DB_XREF= gi:34895227
GEN=OJ1212_B09.12
TID=Os.48023.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48023 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) receptor-like kinase (OJ1212_B09.12), mRNA.
PROD=receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g024108/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02410Os.48023.1.A1_at8/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.33796.1.S1_x_at5/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.26617.2.S1_x_at4/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.7310.1.S1_at3/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.45516.2.S1_x_at2/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.12928.1.S1_at1/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02470NANA1+793644..794335hypothetical protein
LOC_Os01g02480NANA1+797700..798456retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48023.1.A1_at--1028--8811Chr01:771419..771443 (25 bp)
TGATATTTACTACGCTTAAACTCTT
LOC_Os01g02410
Os.48023.1.A1_at--644--4891Chr01:771406..771430 (25 bp)
GCTTAAACTCTTTTTTCGGTGTATG
LOC_Os01g02410
Os.48023.1.A1_at--1024--5171Chr01:771363..771387 (25 bp)
GCAAGTGTTCTTGTACTAGCTGCTG
LOC_Os01g02410
Os.48023.1.A1_at--104--2031Chr01:771349..771373 (25 bp)
ACTAGCTGCTGGTGAGTTGAGCATT
LOC_Os01g02410
Os.48023.1.A1_at--45--10491NONE
TTACATTTGCTCGTGAATTGGGCCA
NONE
Os.48023.1.A1_at--661--3152Chr01:901476..901500 (25 bp)
AATTGGGCCACATGTGAACCGTCCG
NONE
Os.48023.1.A1_at--61--2111NONE
ACATGTGAACCGTCCGATCAATCCA
NONE
Os.48023.1.A1_at--431--4051NONE
CGATCAATCCATCGTTCATGGGCCG
NONE
Os.48023.1.A1_at--1062--92Chr01:771277..771301 (25 bp)
ATTAGTTGGGCCATCGAAGCAAGGC
LOC_Os01g02410
Os.48023.1.A1_at--1000--10032Chr01:771250..771274 (25 bp)
TAGATGGGCCATCCTAACCTGTGGA
LOC_Os01g02410
Os.48023.1.A1_at--177--9811Chr01:771236..771260 (25 bp)
TAACCTGTGGACCAGCAATCATCAT
LOC_Os01g02410
Target Sequence 
TGATATTTACTACGCTTAAACTCTTTTTTCGGTGTATGAAATACTACTATAAATAAGCAAGTGTTCTTGTACTAGCTGCT
GGTGAGTTGAGCATTACATTTGCTCGTGAATTGGGCCACATGTGAACCGTCCGATCAATCCATCGTTCATGGGCCGCGGG
GATTAGTTGGGCCATCGAAGCAAGGCCTTAGATGGGCCATCCTAACCTGTGGACCAGCAATCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48023.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis