Browse Element(s) Details


OsAffx.29396.1.S1_x_at

Description gb:NM_193843.1
DB_XREF= gi:34914769
GEN=P0493G01.25
TID=OsAffx.29396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0493G01.25 (P0493G01.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g265602/11hypothetical protein
LOC_Os12g066901/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26540Os.40360.1.S1_x_at1/114+15454983..15456221hypothetical protein
LOC_Os04g26550Os.53294.1.S1_at11/114+15474803..15475853expressed protein
LOC_Os04g26560OsAffx.29396.5.S1_x_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.5.S1_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.1.S1_x_at2/114+15479263..15482418hypothetical protein
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29396.1.S1_x_at--1110--8371Chr01:15626829..15626949 (25 bp)
GGCGACAACTGGACGCTGAGCCTGT
NONE
OsAffx.29396.1.S1_x_at--825--8911Chr01:15626941..15626965 (25 bp)
TGAGCCTGTCGGCACTTGTCCGAGT
NONE
OsAffx.29396.1.S1_x_at--361--2072Chr04:15480528..15480552 (25 bp)
ACTTGTCCGAGTCGCCATCTTCGAC
LOC_Os04g26560
OsAffx.29396.1.S1_x_at--301--5813Chr12:3256768..3256789 (22 bp)
GACCGCCGGGTTCGAACCGAGCACT
LOC_Os12g06690
OsAffx.29396.1.S1_x_at--1093--5431Chr01:15627003..15627027 (25 bp)
GAACCGAGCACTGAGCTTTTCGACG
NONE
OsAffx.29396.1.S1_x_at--337--4231Chr01:15627006..15627030 (25 bp)
CCGAGCACTGAGCTTTTCGACGTCG
NONE
OsAffx.29396.1.S1_x_at--284--10371Chr01:15627019..15627043 (25 bp)
TTTTCGACGTCGTGTTCTATGCCAC
NONE
OsAffx.29396.1.S1_x_at--40--1911Chr01:15627025..15627049 (25 bp)
ACGTCGTGTTCTATGCCACCGTGAA
NONE
OsAffx.29396.1.S1_x_at--779--4091Chr01:15627052..15627076 (25 bp)
CGAAGACGGTTGTCACCCCGGCCAG
NONE
OsAffx.29396.1.S1_x_at--488--8711Chr01:15627062..15627086 (25 bp)
TGTCACCCCGGCCAGGACGAAGAAA
NONE
OsAffx.29396.1.S1_x_at--484--1651Chr01:15627124..15627148 (25 bp)
AGCGCTCCGATCTACGGCCGGTGAA
NONE
Target Sequence 
GGCGACAACTGGACGCTGAGCCTGTCGGCACTTGTCCGAGTCGCCATCTTCGACTGGGCGTGCCGGACCGCCGGGTTCGA
ACCGAGCACTGAGCTTTTCGACGTCGTGTTCTATGCCACCGTGAACTCGAAGACGGTTGTCACCCCGGCCAGGACGAAGA
AAACGGCGTTCGGAAGCGTGAACTTTAATGTTCGCTCTGAGCGCTCCGATCTACGGCCGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29396.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis