Browse Element(s) Details


OsAffx.26168.1.S1_x_at

Description tigr:9632.m02502
TID=OsAffx.26168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2662011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26560OsAffx.29396.5.S1_x_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.5.S1_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.1.S1_x_at2/114+15479263..15482418hypothetical protein
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein
LOC_Os04g26630OsAffx.26169.1.S1_at10/114+15510695..15512200hypothetical protein
LOC_Os04g26640OsAffx.13987.1.S1_at11/114+15516282..15517149hypothetical protein
LOC_Os04g26640Os.54523.1.S1_at2/114+15516282..15517149hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26168.1.S1_x_at--56--8331Chr04:15502729..15502753 (25 bp)
GGCTCTATGCGTCAGCGGCGCAGGA
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--696--7631Chr04:15502692..15502716 (25 bp)
GGGAGCAGATCCAATGCCTCCTACT
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--72--9891Chr04:15502671..15502695 (25 bp)
TACTCCCTCTCCACCGGTGGTGGCA
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--842--6251Chr04:15502634..15502658 (25 bp)
GATGGTGGCTTTGCGCAGGCTACGA
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--264--10291Chr04:15502625..15502649 (25 bp)
TTTGCGCAGGCTACGACGGTGCTCG
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--531--7292Chr11:10812470..10812490 (21 bp)
GTGCTCGGGAGAGGCGGATCCAGCG
NONE
OsAffx.26168.1.S1_x_at--271--6371Chr04:15502573..15502597 (25 bp)
GATCCAGCGTCGACAGGCCTCGGGA
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--825--4691Chr04:15502486..15502510 (25 bp)
GCGGCTCTACGCGTCAGTGACGCAG
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--737--3271Chr04:15502400..15502424 (25 bp)
CAAAGAAGAGGGATGGCAGCTTTGC
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--539--5051Chr04:15502385..15502409 (25 bp)
GCAGCTTTGCGCAGGCGACGACAGT
LOC_Os04g26620
OsAffx.26168.1.S1_x_at--299--3491Chr04:15502374..15502398 (25 bp)
CAGGCGACGACAGTGCTCGGGATGA
LOC_Os04g26620
Target Sequence 
GGCTCTATGCGTCAGCGGCGCAGGAGAGGGGGCGGCGGGGAGCAGATCCAATGCCTCCTACTCCCTCTCCACCGGTGGTG
GCAGCAAAGAAGAGGGATGGTGGCTTTGCGCAGGCTACGACGGTGCTCGGGAGGATGGGGGTGCTCGGGAGAGGCGGATC
CAGCGTCGACAGGCCTCGGGAGGGCGGATCCGACGCCGCCATGCCTCGGGAGCGACGCGGGGAATAGGGTGGCGGTGGCA
GCGGCGGCTCTACGCGTCAGTGACGCAGGGGAGGGGGCGGCGGGGAGCAGATCCGATGCCTCCTCCTCCCTCTCCACCGG
TGGTGGCAGCAAAGAAGAGGGATGGCAGCTTTGCGCAGGCGACGACAGTGCTCGGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26168.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis