Browse Element(s) Details


OsAffx.13987.1.S1_at

Description tigr:9632.m02504
TID=OsAffx.13987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2664011/11hypothetical protein
LOC_Os02g195701/11retrotransposon protein, putative, unclassified
LOC_Os08g192801/11hypothetical protein
LOC_Os08g190101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein
LOC_Os04g26630OsAffx.26169.1.S1_at10/114+15510695..15512200hypothetical protein
LOC_Os04g26640OsAffx.13987.1.S1_at11/114+15516282..15517149hypothetical protein
LOC_Os04g26640Os.54523.1.S1_at2/114+15516282..15517149hypothetical protein
LOC_Os04g26650OsAffx.25936.1.S1_s_at11/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26650OsAffx.25936.7.S1_s_at11/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26650OsAffx.25936.2.S1_x_at3/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26650OsAffx.25936.5.S1_x_at1/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26660NANA4+15533263..15539875retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13987.1.S1_at--1010--7354Chr08:11343361..11343380 (20 bp)
GTGAAGCATCATTTGACGCCTCCTA
LOC_Os08g19010
OsAffx.13987.1.S1_at--19--431Chr04:15517064..15517088 (25 bp)
ATCATTTGACGCCTCCTACAATTGT
LOC_Os04g26640
OsAffx.13987.1.S1_at--761--8831Chr04:15517058..15517082 (25 bp)
TGACGCCTCCTACAATTGTAAGGGT
LOC_Os04g26640
OsAffx.13987.1.S1_at--1001--9231Chr04:15517051..15517075 (25 bp)
TCCTACAATTGTAAGGGTGGCCGGC
LOC_Os04g26640
OsAffx.13987.1.S1_at--341--2891Chr04:15517039..15517063 (25 bp)
AAGGGTGGCCGGCCAATATCAAGAA
LOC_Os04g26640
OsAffx.13987.1.S1_at--1070--9731Chr04:15516990..15517014 (25 bp)
TCAATCCATAAGCTCGCCGCTCAAG
LOC_Os04g26640
OsAffx.13987.1.S1_at--429--8691Chr04:15516858..15516882 (25 bp)
TGTGCTAAAATCGAGCGTGCATTTA
LOC_Os04g26640
OsAffx.13987.1.S1_at--396--3052Chr02:14434269..14434288 (20 bp)
AATCGAGCGTGCATTTATAGAGATG
NONE
OsAffx.13987.1.S1_at--672--1113Chr11:12831845..12831869 (25 bp)
AGTGTTGGCCCCAATTCCTCTCAGT
NONE
OsAffx.13987.1.S1_at--462--10671Chr04:15516335..15516518 (25 bp)
TTCCTCTCAGTCTTCACAGCTAAAA
LOC_Os04g26640
OsAffx.13987.1.S1_at--1079--7131Chr04:15516326..15516509 (25 bp)
GTCTTCACAGCTAAAACATGTGCTT
LOC_Os04g26640
Target Sequence 
GTGAAGCATCATTTGACGCCTCCTACAATTGTAAGGGTGGCCGGCCAATATCAAGAAGATGAAGTAAAGTCGCCGGAGCC
CTCAATCCATAAGCTCGCCGCTCAAGTGAAGAAACTCCGCAAGGAGAACATAGAGCTTAGGGATCGCAATGCGGAGTTAG
GGGTAGAACTCGCTGAAATTAGAAATAATTTTGATACCCTTAGTCGCGGTTTGTGTGCTAAAATCGAGCGTGCATTTATA
GAGATGGGGAAGAAGATTGCAGAGGGATTGGGCACCAGAGTGGTTCGGCCGAACCAGTGTTGGCCCCAATTCCTCTCAGT
CTTCACAGCTAAAACATGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis