Browse Element(s) Details


OsAffx.26169.1.S1_at

Description tigr:9632.m02503
TID=OsAffx.26169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2663010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein
LOC_Os04g26630OsAffx.26169.1.S1_at10/114+15510695..15512200hypothetical protein
LOC_Os04g26640OsAffx.13987.1.S1_at11/114+15516282..15517149hypothetical protein
LOC_Os04g26640Os.54523.1.S1_at2/114+15516282..15517149hypothetical protein
LOC_Os04g26650OsAffx.25936.1.S1_s_at11/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26650OsAffx.25936.7.S1_s_at11/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26650OsAffx.25936.2.S1_x_at3/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26650OsAffx.25936.5.S1_x_at1/114+15528357..15530913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26660NANA4+15533263..15539875retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26169.1.S1_at--521--6311Chr04:15510742..15510766 (25 bp)
GATGAGCGAGTACGTCCAAGATAAG
LOC_Os04g26630
OsAffx.26169.1.S1_at--415--2851NONE
AAGTCGACTTCGAAGTTTGTACAGC
NONE
OsAffx.26169.1.S1_at--989--68561Chr12:16521212..16521236 (25 bp)
GTTTGTACAGCTTTACCCACATGAT
NONE
OsAffx.26169.1.S1_at--629--6857Chr11:12549379..12549402 (24 bp)
GTTTGCAAGACTCTACCACATTCTA
NONE
OsAffx.26169.1.S1_at--227--6131Chr04:15512006..15512030 (25 bp)
GAGGTCATAACAAAGCCTTTACCCT
LOC_Os04g26630
OsAffx.26169.1.S1_at--201--6075Chr08:14108664..14108683 (20 bp)
GAGTTTAGCCTTGCACTAGCACGAT
NONE
OsAffx.26169.1.S1_at--965--92549Chr12:16521365..16521389 (25 bp)
TCCTCCATCCTAGGCATACTTGGAA
NONE
OsAffx.26169.1.S1_at--863--4851Chr04:15512096..15512120 (25 bp)
GCTAGAACCGTTATGGCGAGCCCAC
LOC_Os04g26630
OsAffx.26169.1.S1_at--894--851Chr04:15512108..15512132 (25 bp)
ATGGCGAGCCCACGCTTTAAACTTA
LOC_Os04g26630
OsAffx.26169.1.S1_at--572--10473Chr04:15512130..15512154 (25 bp)
TTAACGCCGTGGTGACGAACATCGA
LOC_Os04g26630
OsAffx.26169.1.S1_at--1026--8931Chr04:15512142..15512166 (25 bp)
TGACGAACATCGAACGGACTCCACC
LOC_Os04g26630
Target Sequence 
GATGAGCGAGTACGTCCAAGATAAGGTGGAGGCACAAACCAAGTCGACTTCGAAGTTTGTACAGCTTTACCCACATGATA
TGAACACTCTACTTTGTTTTGAGTTTGCAAGACTCTACCACATTCTACACGGTGAATATGGTCTAGAGGTCATAACAAAG
CCTTTACCCTACTTAGAGTTTAGCCTTGCACTAGCACGATACGTGTTCCTCCATCCTAGGCATACTTGGAATATGGCTAG
AACCGTTATGGCGAGCCCACGCTTTAAACTTAACGCCGTGGTGACGAACATCGAACGGACTCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis