Browse Element(s) Details


OsAffx.29396.5.S1_at

Description tigr:9632.m02496
TID=OsAffx.29396.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26540Os.40360.1.S1_x_at1/114+15454983..15456221hypothetical protein
LOC_Os04g26550Os.53294.1.S1_at11/114+15474803..15475853expressed protein
LOC_Os04g26560OsAffx.29396.5.S1_x_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.5.S1_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.1.S1_x_at2/114+15479263..15482418hypothetical protein
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29396.5.S1_at--83--10751Chr04:15481880..15481904 (25 bp)
TTGACGTATTCAAGAACCGACTTCG
LOC_Os04g26560
OsAffx.29396.5.S1_at--1061--5711Chr04:15481882..15481906 (25 bp)
GACGTATTCAAGAACCGACTTCGGG
LOC_Os04g26560
OsAffx.29396.5.S1_at--1159--2291Chr04:15482025..15482049 (25 bp)
AAAGGCTGAGATTGTGCGCCTCAAG
LOC_Os04g26560
OsAffx.29396.5.S1_at--893--6051Chr04:15482032..15482056 (25 bp)
GAGATTGTGCGCCTCAAGGCTGAAC
LOC_Os04g26560
OsAffx.29396.5.S1_at--568--10831Chr04:15482036..15482060 (25 bp)
TTGTGCGCCTCAAGGCTGAACTCAA
LOC_Os04g26560
OsAffx.29396.5.S1_at--990--9151Chr04:15482039..15482063 (25 bp)
TGCGCCTCAAGGCTGAACTCAAGAA
LOC_Os04g26560
OsAffx.29396.5.S1_at--495--4771Chr04:15482080..15482104 (25 bp)
GCTGCTCTGATTGATTATTACAATC
LOC_Os04g26560
OsAffx.29396.5.S1_at--380--6551Chr04:15482092..15482116 (25 bp)
GATTATTACAATCTCACTGAGACGA
LOC_Os04g26560
OsAffx.29396.5.S1_at--335--6111Chr04:15482209..15482233 (25 bp)
GAGTCCACGAAGACGGCATGCCAAA
LOC_Os04g26560
OsAffx.29396.5.S1_at--231--5751Chr04:15482220..15482244 (25 bp)
GACGGCATGCCAAATACTTCGCCTT
LOC_Os04g26560
OsAffx.29396.5.S1_at--1045--8571Chr04:15482331..15482355 (25 bp)
TGGTGGTGCGGTCTTGGACTACGCC
LOC_Os04g26560
Target Sequence 
TTGACGTATTCAAGAACCGACTTCGGGCCAAGGATGACGAACTGGGCCGCAAGAGCTTGGAGATGGAGAGCCTCGCTAAC
ACCCTCAAAGAGACGAAGGCTGAAAACAAACGACTCCAAGCCGAGCTGGAGAAAGGGAGGGAGGCAAAGGCTGAGATTGT
GCGCCTCAAGGCTGAACTCAAGAAGGAGCAAGCACATTCTGCTGCTCTGATTGATTATTACAATCTCACTGAGACGAAGA
TGGAGGCTCTTCGCCTAGAGGTCAGCAAAGCTGAGGCGAGTGCCGAGAAGGAGTCGCAGCGGTTCGTGCGGGAGGTGGCG
AAAGCCACCGAGTCCACGAAGACGGCATGCCAAATACTTCGCCTTGCCCTTTCCGACATGGGGGCGAGGGTGCGAGGAGT
CCCTGGCGAAGATGCCTCCGCCTTCGACTTCTTGGAGTGGACCCAGCAGGCTGGTGGTGCGGTCTTGGACTACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29396.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis