Browse Element(s) Details


OsAffx.7507.1.S1_at

Description tigr:9640.m00603
TID=OsAffx.7507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0679011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06720OsAffx.19675.1.S1_x_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06720OsAffx.19675.1.S1_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06730OsAffx.7504.1.S1_at11/1112+3274132..3274808hypothetical protein
LOC_Os12g06740Os.12960.1.S1_at11/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06740OsAffx.31618.1.S1_at1/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06750OsAffx.31620.1.S1_at10/1112+3283378..3286501hypothetical protein
LOC_Os12g06750OsAffx.31621.1.S1_at1/1112+3283378..3286501hypothetical protein
LOC_Os12g06760OsAffx.31620.1.S1_at2/1112+3286850..3287385hypothetical protein
LOC_Os12g06770OsAffx.31621.1.S1_at10/1112+3288021..3289480hypothetical protein
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7507.1.S1_at--150--6191Chr12:3295068..3295092 (25 bp)
GAGGAGCCTACCACCACATTGGAGA
LOC_Os12g06790
OsAffx.7507.1.S1_at--1123--3411Chr12:3295043..3295067 (25 bp)
CAGACAGGTTCTCAGCATAAGCAGT
LOC_Os12g06790
OsAffx.7507.1.S1_at--606--6791Chr12:3295011..3295034 (24 bp)
GTTATCAACAACTCTGTGTCACAGT
LOC_Os12g06790
OsAffx.7507.1.S1_at--938--5571Chr12:3294659..3294683 (25 bp)
GAAATCCACAACCTTTTGCTTGAAG
LOC_Os12g06790
OsAffx.7507.1.S1_at--652--91Chr12:3294626..3294650 (25 bp)
ATTCCTCCCAGTTTAGTGATGCCTT
LOC_Os12g06790
OsAffx.7507.1.S1_at--454--1211Chr12:3294589..3294613 (25 bp)
AGTTTTGCCGCTGTGATTTTCATGG
LOC_Os12g06790
OsAffx.7507.1.S1_at--35--8131Chr12:3294549..3294573 (25 bp)
GGACTATTACCGGTATGGCAAGACA
LOC_Os12g06790
OsAffx.7507.1.S1_at--945--5651Chr12:3294459..3294552 (25 bp)
GACATGCTTCGAAACAGGACAGGAT
LOC_Os12g06790
OsAffx.7507.1.S1_at--1052--9751Chr12:3294409..3294433 (25 bp)
TAATGCTAGCCACCTACACCTTGGT
LOC_Os12g06790
OsAffx.7507.1.S1_at--52--9871Chr12:3294395..3294419 (25 bp)
TACACCTTGGTGACAGAACTGGATG
LOC_Os12g06790
OsAffx.7507.1.S1_at--388--6291Chr12:3294374..3294398 (25 bp)
GATGATAATCTCCAATACTCCACAA
LOC_Os12g06790
Target Sequence 
GAGGAGCCTACCACCACATTGGAGACAGACAGGTTCTCAGCATAAGCAGTAGGTATCAGTTATCAACAACTCTGTGTCAC
AGTACTAATTCAGCTGAAATCCACAACCTTTTGCTTGAAGATGAAGACATTCCTCCCAGTTTAGTGATGCCTTCAAAGCA
GGAACAGTTTTGCCGCTGTGATTTTCATGGCATTGACTATCTAGAGGACTATTACCGGTATGGCAAGACATGCTTCGAAA
CAGGACAGGATCACATGGCTGTAGAAACAATCAAACTAATGCTAGCCACCTACACCTTGGTGACAGAACTGGATGATAAT
CTCCAATACTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis