Browse Element(s) Details


OsAffx.31622.1.S1_at

Description tigr:9640.m00608
TID=OsAffx.31622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0683011/11Citrate binding protein precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31622.1.S1_at--519--7631Chr12:3320256..3320280 (25 bp)
GGGACATGTTCAAGCTGCATAAGCC
LOC_Os12g06830
OsAffx.31622.1.S1_at--849--3231Chr12:3320266..3320290 (25 bp)
CAAGCTGCATAAGCCGTACGACCTG
LOC_Os12g06830
OsAffx.31622.1.S1_at--836--1691Chr12:3320382..3320406 (25 bp)
AGCCACGCTCCGAAATACTCCTAAA
LOC_Os12g06830
OsAffx.31622.1.S1_at--83--3011Chr12:3320395..3320759 (25 bp)
AATACTCCTAAACGTGTTCGGCGCG
LOC_Os12g06830
OsAffx.31622.1.S1_at--1092--4111Chr12:3320766..3320790 (25 bp)
CGCAACACGACGCTGATGCTGCACG
LOC_Os12g06830
OsAffx.31622.1.S1_at--284--4491Chr12:3320800..3320824 (25 bp)
GCCGGCTGATGTACTACCACGACGA
LOC_Os12g06830
OsAffx.31622.1.S1_at--596--451Chr12:3320847..3320871 (25 bp)
ATCTACGACAGGTGGTTCAGGCTCA
LOC_Os12g06830
OsAffx.31622.1.S1_at--1141--10531Chr12:3320862..3320886 (25 bp)
TTCAGGCTCAACGTGGTCCACGATG
LOC_Os12g06830
OsAffx.31622.1.S1_at--899--8351Chr12:3320952..3320976 (25 bp)
GGCGGCTACAGGCATTACTTCAAGT
LOC_Os12g06830
OsAffx.31622.1.S1_at--1113--2031Chr12:3320968..3320992 (25 bp)
ACTTCAAGTTCGTGGTGTACGTGCA
LOC_Os12g06830
OsAffx.31622.1.S1_at--624--1071Chr12:3320994..3321018 (25 bp)
AGGGACCCCTCCCACTATATGGAGT
LOC_Os12g06830
Target Sequence 
GGGACATGTTCAAGCTGCATAAGCCGTACGACCTGCCGCCGGAGCAGCGGTACGAGTTCCGCGACGGCGTGCGGCGGATG
TGGGTGCTCTGCTCCGACCGCCCCTTCAGCCCCGGCAGCACCACCAAGCCACGCTCCGAAATACTCCTAAACGTGTTCGG
CGCGTCGGGGCGCAACACGACGCTGATGCTGCACGTCTACGGCGGCCGGCTGATGTACTACCACGACGAGGCCCGGGTCG
TCGACGGCGACATCTACGACAGGTGGTTCAGGCTCAACGTGGTCCACGATGTCGCCGGCGTGGGGAAGCTTGCCGTGTTC
GTCGACGGCGAGCGGAGGCTCGCCGTCCCCGGACACGGCGGCTACAGGCATTACTTCAAGTTCGTGGTGTACGTGCAGAG
GGACCCCTCCCACTATATGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis