Browse Element(s) Details


Os.9290.1.A1_at

Description gb:CB663072
DB_XREF= gi:29666797
DB_XREF=OSJNEd07K09.r
CLONE=OSJNEd07K09
TID=Os.9290.1
CNT=33
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.9290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102D17, full insert sequence
FL= gb:AK099823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0685011/11transcription elongation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06880OsAffx.31623.1.S1_at11/1112+3346355..3346828hypothetical protein
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9290.1.A1_at--352--5412Chr03:21122826..21122853 (24 bp)
GAAGCGCAGAACAAGCCCAGCACCT
NONE
Os.9290.1.A1_at--596--4551Chr12:3325950..3325974 (25 bp)
GCCCAGCACCTACATATCATAACAA
LOC_Os12g06850
Os.9290.1.A1_at--182--2491Chr12:3325915..3325939 (25 bp)
AACAGCATCGGCTATTCTACTACTT
LOC_Os12g06850
Os.9290.1.A1_at--1155--9251Chr12:3325535..3325912 (25 bp)
TCCTCTGCTCCAGTTAGGACTGTAA
LOC_Os12g06850
Os.9290.1.A1_at--439--5971Chr12:3325481..3325505 (25 bp)
GAGAAGCTTGATTCTGCCAGAAAGA
LOC_Os12g06850
Os.9290.1.A1_at--128--6251Chr12:3325221..3325245 (25 bp)
GATGGATATCCACGACATACCAAAG
LOC_Os12g06850
Os.9290.1.A1_at--973--5551Chr12:3325147..3325171 (25 bp)
GAAAGCACCGGTGATTATCCTGCAG
LOC_Os12g06850
Os.9290.1.A1_at--224--6551Chr12:3325135..3325159 (25 bp)
GATTATCCTGCAGACCTACAATTGT
LOC_Os12g06850
Os.9290.1.A1_at--915--7011Chr12:3325041..3325065 (25 bp)
GTACTATCGTTTTTACATTGCCTAT
LOC_Os12g06850
Os.9290.1.A1_at--1011--1391Chr12:3324905..3324929 (25 bp)
AGACTTACAGTGCTCGTTTCTATTG
LOC_Os12g06850
Os.9290.1.A1_at--202--4811Chr12:3324894..3324918 (25 bp)
GCTCGTTTCTATTGTAATTTCTTCT
LOC_Os12g06850
Target Sequence 
GAAGCGCAGAACAAGCCCAGCACCTACATATCATAACAACAAACAGAACAACAGCATCGGCTATTCTACTACTTCCTCCT
CTGCTCCAGTTAGGACTGTAAGGGAGCAGAAAGATAATCTTATGGATCTTGAGAAGCTTGATTCTGCCAGAAAGAGACTC
CAGGAAAACTACCAGGAAGCACAAAATGCAAAAAAGCAGAGGACAATTCAAGTGATGGATATCCACGACATACCAAAGCC
GAAAAATAGAAACGCCTTCATCCGCAAGGGCGGAGGCGGCCTCCCTGGAAAGCACCGGTGATTATCCTGCAGACCTACAA
TTGTAATTTCAAAAAGGCCGAAACGAGAATAAAAGAAGAAGAATGAAGGCTTGATATTTGTTTTCTGGGTATTGTACTAT
CGTTTTTACATTGCCTATTTGGTACCCTAACGTAGCCTCACATCTTCCAGTTCACTGTAATATTGTCCAGTTAGTACATG
AGGCTATGCGTCTGGGTTCCCTTACCAAGAAGAGGAGAGCAAAGTTTATAGACTTACAGTGCTCGTTTCTATTGTAATTT
CTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9290.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis