Browse Element(s) Details


OsAffx.19046.1.S1_at

Description tigr:9639.m02529
TID=OsAffx.19046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2807010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28030NANA11+15616968..15618851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040Os.46314.3.S1_at3/1111+15621198..15621550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050OsAffx.23366.2.S1_s_at1/1111+15623381..15626975transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28060OsAffx.7230.1.S1_at11/1111+15627698..15628866Cytochrome P450 71C4, putative
LOC_Os11g28070OsAffx.19046.1.S1_at10/1111+15633400..15635999hypothetical protein
LOC_Os11g28080NANA11+15640679..15640945hypothetical protein
LOC_Os11g28104Os.46662.2.S1_s_at11/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.31176.1.S1_x_at10/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.26767.1.A1_at9/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.46662.2.S1_x_at2/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.21209.1.S1_at1/1111+15643037..15659723Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19046.1.S1_at--177--232Chr11:15633868..15633892 (25 bp)
ATATTGGCTCCGATACTGGGCGCAA
LOC_Os11g28070
OsAffx.19046.1.S1_at--132--6494Chr12:17964202..17964226 (25 bp)
GATACTGGGCGCAACTACAAAAGTT
NONE
OsAffx.19046.1.S1_at--1127--10712Chr11:15633930..15633954 (25 bp)
TTGCATGTTGCAAGCTTGAGATGAC
LOC_Os11g28070
OsAffx.19046.1.S1_at--327--7711Chr11:15634387..15634411 (25 bp)
GGTGCAACAGTTCCAAAACAAAATT
LOC_Os11g28070
OsAffx.19046.1.S1_at--82--2431Chr11:15634433..15634457 (25 bp)
AAAATGTTGCCCACACATTGCCATG
LOC_Os11g28070
OsAffx.19046.1.S1_at--473--4371NONE
CCACACATTGCCATGGGATCATCAA
NONE
OsAffx.19046.1.S1_at--824--3271Chr11:15635781..15635805 (25 bp)
CAAAGTAAGAGTTACCCCTCACCAG
LOC_Os11g28070
OsAffx.19046.1.S1_at--938--4011Chr11:15635830..15635854 (25 bp)
CGTCATCAATTTCTCTCATTCCAAA
LOC_Os11g28070
OsAffx.19046.1.S1_at--816--71Chr11:15635847..15635871 (25 bp)
ATTCCAAATATTCCAAGCTGCCAAG
LOC_Os11g28070
OsAffx.19046.1.S1_at--495--3091Chr11:15635903..15635927 (25 bp)
AATAAGCACGCTGGGATTGAATCAT
LOC_Os11g28070
OsAffx.19046.1.S1_at--800--3151Chr11:15635936..15635960 (25 bp)
AATTCTGTGCAGTAACCCAATTCCA
LOC_Os11g28070
Target Sequence 
ATATTGGCTCCGATACTGGGCGCAACTACAAAAGTTTGAAGAAGACGGAGAGTTTATAAAAGTTGCATGTTGCAAGCTTG
AGATGACAATTATGCAATTTTGTCAATTATGGTGTTGGTGCAACAGTTCCAAAACAAAATTACAGATTCCTCTAAGAAAA
ACAAAATGTTGCCCACACATTGCCATGGGATCATCAACCGCGCATCACGGTTGGTACAACATCGTTTGTGGTGTAGCGAT
TGTACGGCATCCTGGACTTGTTCTATTTGGTAGCCACGTCGCAAACGTCGCACTCGATCAAAGTAAGAGTTACCCCTCAC
CAGAAGATCGGGCCATGAGAGAGAGAGCGTCATCAATTTCTCTCATTCCAAATATTCCAAGCTGCCAAGAGAAAAAGTTC
CATGAAGCAATGATAGGGAAAATAAGCACGCTGGGATTGAATCATTTGATGAAAATTCTGTGCAGTAACCCAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis