Browse Element(s) Details


Os.54931.1.S2_at

Description gb:AK107329.1
DB_XREF= gi:32992538
TID=Os.54931.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F02, full insert sequence.
FL= gb:AK107124.1 gb:AK107329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3432011/11expressed protein
LOC_Os07g356901/11Protein kinase domain containing protein, expressed
LOC_Os06g010601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g010501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54931.1.S2_at--215--312Chr10:17972350..17972374 (25 bp)
ATAGCCAGTTAGTTCTCAGCCATCA
LOC_Os10g34320
Os.54931.1.S2_at--891--3331Chr10:17972270..17972294 (25 bp)
CACTGTCCTCAGTTGATCTTTTGGT
LOC_Os10g34320
Os.54931.1.S2_at--585--8631Chr10:17972196..17972220 (25 bp)
TGGGATGGGCATCCAGTCACACTTC
LOC_Os10g34320
Os.54931.1.S2_at--611--7091Chr10:17972181..17972205 (25 bp)
GTCACACTTCGAGTTCATCAGAGAT
LOC_Os10g34320
Os.54931.1.S2_at--579--7511Chr10:17972154..17972178 (25 bp)
GTGGATCAAGCTCTTCTACCAGGAA
LOC_Os10g34320
Os.54931.1.S2_at--431--8171Chr10:17972133..17972157 (25 bp)
GGAACATTATCCTGCAGCCTGAAGT
LOC_Os10g34320
Os.54931.1.S2_at--495--4491Chr10:17972048..17972072 (25 bp)
GCCGGATATCACAAGAGCCGCATAC
LOC_Os10g34320
Os.54931.1.S2_at--471--731Chr10:17971993..17972017 (25 bp)
ATGTTGGTGCTCAAGAATCTGCTGA
LOC_Os10g34320
Os.54931.1.S2_at--1031--6133Chr06:34734..34753 (20 bp)
GAGGTGCAAACGGTGCTACTGCTAC
LOC_Os06g01050
Os.54931.1.S2_at--636--4851Chr10:17971933..17971957 (25 bp)
GCTACTGCTACTGAAGCCTGACTAT
LOC_Os10g34320
Os.54931.1.S2_at--644--4472Chr07:21377383..21377402 (20 bp)
GCCTGACTATGACTCTTTCGTGGAA
LOC_Os07g35690
Target Sequence 
ATAGCCAGTTAGTTCTCAGCCATCAGTAACTTCAAATAGAAGGGGCCTAAGTCTTCAGGTGGGTGCTCTGAATGGCAAAA
CACTGTCCTCAGTTGATCTTTTGGTTAGGATTTGTGGAACCGGAGAGAGTAATAGATGGAACATCAGCTCAAACTGGGAT
GGGCATCCAGTCACACTTCGAGTTCATCAGAGATTTGTGGATCAAGCTCTTCTACCAGGAACATTATCCTGCAGCCTGAA
GTCATATCTCATACAAAAGTAGAGAATTTAAGTACGGTGGTTCAGCCAGGTTAACGAACGAAGCCGGATATCACAAGAGC
CGCATACAGGCAAGGCTTTGTTGCAGCATACAAGGACATGTTGGTGCTCAAGAATCTGCTGAAGCAAATAACAACCTTGC
AAAGAGGTGCAAACGGTGCTACTGCTACTGAAGCCTGACTATGACTCTTTCGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54931.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis