Browse Element(s) Details


OsAffx.29541.1.S1_at

Description tigr:9636.m03595
TID=OsAffx.29541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=adenosine diphosphate glucose pyrophosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3575011/11Germin-like protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed
LOC_Os08g35760Os.3380.1.S1_at11/118+22425165..22426202Auxin-binding protein ABP20 precursor, putative, expressed
LOC_Os08g35770OsAffx.17350.1.S1_at11/118+22431171..22431482hypothetical protein
LOC_Os08g35780NANA8+22437405..22438043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35790NANA8+22440125..22440625hypothetical protein
LOC_Os08g35800Os.28943.1.S1_x_at2/118+22444912..22448126retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29541.1.S1_at--299--1831Chr08:22421011..22421035 (25 bp)
ACGCCGTCGGGCTACCAGTGCAGGC
LOC_Os08g35750
OsAffx.29541.1.S1_at--1156--7651Chr08:22420933..22420957 (25 bp)
GGGATCCTCATCAGGCCCTTCAACA
LOC_Os08g35750
OsAffx.29541.1.S1_at--65--9431Chr08:22420890..22420914 (25 bp)
TCGTGCAGCAGTACCCCGCCGTGAA
LOC_Os08g35750
OsAffx.29541.1.S1_at--1018--9251Chr08:22420741..22420765 (25 bp)
TCCTCCAGCGACAACAAGGTGTACT
LOC_Os08g35750
OsAffx.29541.1.S1_at--301--4351Chr08:22420737..22420761 (25 bp)
CCAGCGACAACAAGGTGTACTACAA
LOC_Os08g35750
OsAffx.29541.1.S1_at--119--1471Chr08:22420705..22420729 (25 bp)
AGCAAGGGCGGGATGTTCGTGTTCC
LOC_Os08g35750
OsAffx.29541.1.S1_at--200--7971Chr08:22420695..22420719 (25 bp)
GGATGTTCGTGTTCCCGCAGGGCCT
LOC_Os08g35750
OsAffx.29541.1.S1_at--696--10671Chr08:22420663..22420687 (25 bp)
TTCCAGTACAACACCGGCGACACGA
LOC_Os08g35750
OsAffx.29541.1.S1_at--448--2451Chr08:22420567..22420591 (25 bp)
AACAACCTGCCGACTTCCTACGTGG
LOC_Os08g35750
OsAffx.29541.1.S1_at--1028--1751Chr08:22420563..22420587 (25 bp)
ACCTGCCGACTTCCTACGTGGTGAA
LOC_Os08g35750
OsAffx.29541.1.S1_at--735--9151Chr08:22420560..22420584 (25 bp)
TGCCGACTTCCTACGTGGTGAAGGG
LOC_Os08g35750
Target Sequence 
ACGCCGTCGGGCTACCAGTGCAGGCCGGCGGCGACGGTCACCGCCGCGGACTTCTACAGCGGCGCCCTGGCCAGGCCGGG
GATCCTCATCAGGCCCTTCAACACCAGCCTCGCCTCGGCGTTCGTGCAGCAGTACCCCGCCGTGAACGGCCTCGGCATCT
CCGCCTCCCGCGTCGACATCCTCCCCGGCGGCGTCGTGCCGCTGCACACCCATCCGGCCGGCTCCGAGCTCCTCTACGTC
CTGGACGGCGCCTTGGTCGCCGGCTTCATCTCCTCCAGCGACAACAAGGTGTACTACAAGGAGGTGAGCAAGGGCGGGAT
GTTCGTGTTCCCGCAGGGCCTGCTCCACTTCCAGTACAACACCGGCGACACGACGGCGGTGGCGTTCGCGGCGTACAGCA
GCTCGAACCCCGGCCTGCAGATCCTCGACTACGCGCTCTTCGCCAACAACCTGCCGACTTCCTACGTGGTGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis