Browse Element(s) Details


Os.3380.1.S1_at

Description gb:AB010876.1
DB_XREF= gi:4239820
GEN=OsGLP1
TID=Os.3380.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.3380 (NCBI UniGene Cluster)
DEF=Oryza sativa OsGLP1 mRNA for germin-like protein 1, complete cds.
PROD=germin-like protein 1
FL= gb:AK104729.1 gb:AF032975.1 gb:AB010876.1 gb:AK065284.1 gb:AF051156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3576011/11Auxin-binding protein ABP20 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed
LOC_Os08g35760Os.3380.1.S1_at11/118+22425165..22426202Auxin-binding protein ABP20 precursor, putative, expressed
LOC_Os08g35770OsAffx.17350.1.S1_at11/118+22431171..22431482hypothetical protein
LOC_Os08g35780NANA8+22437405..22438043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35790NANA8+22440125..22440625hypothetical protein
LOC_Os08g35800Os.28943.1.S1_x_at2/118+22444912..22448126retrotransposon protein, putative, unclassified
LOC_Os08g35810NANA8+22448748..22454950retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3380.1.S1_at--377--511Chr08:22425510..22425534 (25 bp)
ATCGTCGAGAAGGTCACCTTCTTGG
LOC_Os08g35760
Os.3380.1.S1_at--682--9711Chr08:22425464..22425488 (25 bp)
TCAAGTCCGTCCTCGGCGGTAGCGG
LOC_Os08g35760
Os.3380.1.S1_at--730--9891Chr08:22425445..22425469 (25 bp)
TAGCGGTTAAGTTCGTCGTACGTCT
LOC_Os08g35760
Os.3380.1.S1_at--439--6991Chr08:22425428..22425452 (25 bp)
GTACGTCTCTCTCCGGTCGAGTTGG
LOC_Os08g35760
Os.3380.1.S1_at--829--7731Chr08:22425375..22425399 (25 bp)
GGTGGTCACTCCGTGTGATTGATTA
LOC_Os08g35760
Os.3380.1.S1_at--216--4991Chr08:22425346..22425370 (25 bp)
GCATGCATGCACTTCTGTCATGGGA
LOC_Os08g35760
Os.3380.1.S1_at--864--3491Chr08:22425328..22425352 (25 bp)
CATGGGAATGTGTCTGATTTCTTTT
LOC_Os08g35760
Os.3380.1.S1_at--181--6751Chr08:22425284..22425308 (25 bp)
GTTCATGTCAATTTCTTTCAGATTA
LOC_Os08g35760
Os.3380.1.S1_at--230--2271Chr08:22425244..22425268 (25 bp)
AAATAATCTCTAGGTGTGTCACTGT
LOC_Os08g35760
Os.3380.1.S1_at--127--7451Chr08:22425229..22425253 (25 bp)
GTGTCACTGTAATTTGTTGGAACGA
LOC_Os08g35760
Os.3380.1.S1_at--881--8171Chr08:22425211..22425235 (25 bp)
GGAACGAAAGACTAAACTGTGCATC
LOC_Os08g35760
Target Sequence 
ATCGTCGAGAAGGTCACCTTCTTGGACGACGCGCAGGTGAAGAAGCTCAAGTCCGTCCTCGGCGGTAGCGGTTAAGTTCG
TCGTACGTCTCTCTCCGGTCGAGTTGGTCGCCGCCGCCGCCGTCGTCGTCGTCGTGGTGGTCACTCCGTGTGATTGATTA
ATTTGCATGCATGCACTTCTGTCATGGGAATGTGTCTGATTTCTTTTTTCATGTTATGCTTAATTTGTTCATGTCAATTT
CTTTCAGATTAATTAAGTGGTGGTTCAAATAATCTCTAGGTGTGTCACTGTAATTTGTTGGAACGAAAGACTAAACTGTG
CATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis