Browse Element(s) Details


OsAffx.17349.1.S1_at

Description tigr:9636.m03593
TID=OsAffx.17349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3573011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35690Os.47463.1.S1_x_at3/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35690Os.14491.2.S1_x_at2/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed
LOC_Os08g35760Os.3380.1.S1_at11/118+22425165..22426202Auxin-binding protein ABP20 precursor, putative, expressed
LOC_Os08g35770OsAffx.17350.1.S1_at11/118+22431171..22431482hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17349.1.S1_at--616--1471Chr08:22411151..22411175 (25 bp)
AGAAGGCGCACCTGCTCTCCCATGG
LOC_Os08g35730
OsAffx.17349.1.S1_at--738--891Chr08:22411067..22411091 (25 bp)
AGGCGCGCGGCGAGAATGGCAAGGC
LOC_Os08g35730
OsAffx.17349.1.S1_at--18--4231Chr08:22411034..22411058 (25 bp)
CCGAGAATGTGGAGGTCCAGACGCC
LOC_Os08g35730
OsAffx.17349.1.S1_at--1023--4491Chr08:22410924..22410948 (25 bp)
GCCGAGGACGCGGTGTTCCAGACTA
LOC_Os08g35730
OsAffx.17349.1.S1_at--692--951Chr08:22410920..22410944 (25 bp)
AGGACGCGGTGTTCCAGACTACGCC
LOC_Os08g35730
OsAffx.17349.1.S1_at--159--3351Chr08:22410820..22410844 (25 bp)
CACGATCCTGTGGTGCCTGTGCCGG
LOC_Os08g35730
OsAffx.17349.1.S1_at--974--4551Chr08:22410767..22410791 (25 bp)
GCGCGCTGCACCAGAAGGCGCCGTT
LOC_Os08g35730
OsAffx.17349.1.S1_at--854--4031Chr08:22410746..22410770 (25 bp)
CGTTCCGGTCGTGGATGTCGGAGCA
LOC_Os08g35730
OsAffx.17349.1.S1_at--384--6271Chr08:22410733..22410757 (25 bp)
GATGTCGGAGCAGGGCTACGTCGAG
LOC_Os08g35730
OsAffx.17349.1.S1_at--116--4731Chr08:22410689..22410713 (25 bp)
GCTGGGCTCTGGTGCCCAAGCTGTC
LOC_Os08g35730
OsAffx.17349.1.S1_at--214--2691Chr08:22410672..22410696 (25 bp)
AAGCTGTCCGCGGAATGCGGGCGCA
LOC_Os08g35730
Target Sequence 
AGAAGGCGCACCTGCTCTCCCATGGCGAGGTGAAGGAGACGGCGCCCGCCGAGCAGGTGCCCGATGCACCGCGCCCCAGC
AAAAAGGCGCGCGGCGAGAATGGCAAGGCGGCAGCGGCCGAGAATGTGGAGGTCCAGACGCCGCCGCCACCACTTGTCGC
CGATGCACCGCGCCACAGCAAGAAGAGGAAGGCGCCACCGCCGCCGTCACCTCCCCGAGAAGAGGAGGCCGAGGACGCGG
TGTTCCAGACTACGCCGCCGCCGTCGCACAAGAAGGTGGCGGAGCGCATCCTGAACCGGCGGTTCTTCCCGCCGGACCCG
TCGCACGGGGGCACGATCCTGTGGTGCCTGTGCCGGGAGCTCCTCCCGCGTGGCGGCCCCCGCTGCGCGCTGCACCAGAA
GGCGCCGTTCCGGTCGTGGATGTCGGAGCAGGGCTACGTCGAGGAAGCCGGCGGCGCGGGCGGCTGGGCTCTGGTGCCCA
AGCTGTCCGCGGAATGCGGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis