Browse Element(s) Details


Os.50552.1.S1_at

Description gb:AK121795.1
DB_XREF= gi:37991418
TID=Os.50552.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095K05, full insert sequence.
FL= gb:AK121795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3570010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35670Os.55050.1.S1_at11/118+22359906..22364943Response regulator receiver domain containing protein, expressed
LOC_Os08g35680OsAffx.29540.1.S1_at11/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.8598.1.S1_at2/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.13875.1.S1_at1/118+22373653..22377974hypothetical protein
LOC_Os08g35690Os.47463.1.S1_x_at3/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35690Os.14491.2.S1_x_at2/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50552.1.S1_at--476--5411Chr08:22391029..22391053 (25 bp)
GAAGCTGTGTATCGGTTCTTGGAAC
LOC_Os08g35700
Os.50552.1.S1_at--279--3171Chr08:22390502..22390526 (25 bp)
AATTGCTCGCAACTGTTCAACGCAC
LOC_Os08g35700
Os.50552.1.S1_at--77--1851Chr08:22390483..22390507 (25 bp)
ACGCACTTGGAGGTTCTGGATCTTT
LOC_Os08g35700
Os.50552.1.S1_at--1052--6411Chr08:22390465..22390489 (25 bp)
GATCTTTCCTTTTGCCGTGAACTGA
LOC_Os08g35700
Os.50552.1.S1_at--954--31Chr08:22390420..22390444 (25 bp)
ATTGTCGACAGCTGCTCATCATTGA
LOC_Os08g35700
Os.50552.1.S1_at--640--111Chr08:22390393..22390417 (25 bp)
ATTCTCAAGCTATTTGGGTGTACCC
LOC_Os08g35700
Os.50552.1.S1_at--1035--7711NONE
GGGTGTACCCAGATCACAGATGTTT
NONE
Os.50552.1.S1_at--1064--5571Chr08:22389776..22389800 (25 bp)
GAAAGGCCACTCAAATTCGCTGGTT
LOC_Os08g35700
Os.50552.1.S1_at--510--6091Chr08:22389710..22389734 (25 bp)
GAGTCTTTAGTTCCCATGATAACCT
LOC_Os08g35700
Os.50552.1.S1_at--422--3711Chr08:22389677..22389701 (25 bp)
CTAGCCATTCAGCTTAGTCATGATG
LOC_Os08g35700
Os.50552.1.S1_at--125--1171Chr08:22389662..22389686 (25 bp)
AGTCATGATGTCGAAGCCCCTGAAG
LOC_Os08g35700
Target Sequence 
GAAGCTGTGTATCGGTTCTTGGAACAGTCTGGAGGATACCTAACTGAGTTATGCCTGAACAATGTTGAGAAGGCTGGAAA
TCTTACTGCTTATGCAATTGCTCGCAACTGTTCAACGCACTTGGAGGTTCTGGATCTTTCCTTTTGCCGTGAACTGACCA
ATGAAGCGTTGGGGCTGATTGTCGACAGCTGCTCATCATTGAGAATTCTCAAGCTATTTGGGTGTACCCAGATCACAGAT
GTTTTCCTGAAAGGCCACTCAAATTCGCTGGTTACANTTGTTGGGATAGAAGGGAATATACTGAAGCAAACGGNGAGTCT
TTAGTTCCCATGATAACCTACATTAAACTAGCCATTCAGCTTAGTCATGATGTCGAAGCCCCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis