Browse Element(s) Details


Os.55050.1.S1_at

Description gb:AK107384.1
DB_XREF= gi:32992593
TID=Os.55050.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C05, full insert sequence.
FL= gb:AK107384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3567011/11Response regulator receiver domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35640OsAffx.6036.1.S1_at11/118+22335917..22336445hypothetical protein
LOC_Os08g35650OsAffx.6037.1.S1_at11/118+22342214..22346327hypothetical protein
LOC_Os08g35660NANA8+22358234..22358878hypothetical protein
LOC_Os08g35670Os.55050.1.S1_at11/118+22359906..22364943Response regulator receiver domain containing protein, expressed
LOC_Os08g35680OsAffx.29540.1.S1_at11/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.8598.1.S1_at2/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.13875.1.S1_at1/118+22373653..22377974hypothetical protein
LOC_Os08g35690Os.47463.1.S1_x_at3/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35690Os.14491.2.S1_x_at2/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55050.1.S1_at--89--7231Chr08:22360424..22360448 (25 bp)
GTCGACGCCGGCACATCAGAGAAGA
LOC_Os08g35670
Os.55050.1.S1_at--907--2611Chr08:22360376..22360400 (25 bp)
AACCCCGCGCCATTAATGGTACTGG
LOC_Os08g35670
Os.55050.1.S1_at--855--731Chr08:22360307..22360331 (25 bp)
ATGTTCTCTTTGGAATCTCTTCTGG
LOC_Os08g35670
Os.55050.1.S1_at--288--8131Chr08:22360278..22360302 (25 bp)
GGACTATGACCTGCTACCTATGGAA
LOC_Os08g35670
Os.55050.1.S1_at--745--8171Chr08:22360257..22360281 (25 bp)
GGAAGACGTTAGTGCTCCGGACACC
LOC_Os08g35670
Os.55050.1.S1_at--158--8871Chr08:22360221..22360245 (25 bp)
TGATGCAGCTGGTGGCTCACTGGAC
LOC_Os08g35670
Os.55050.1.S1_at--89--3951Chr08:22360185..22360209 (25 bp)
CGGCATGGACATTGGTTGGGATCTC
LOC_Os08g35670
Os.55050.1.S1_at--554--10851Chr08:22360170..22360194 (25 bp)
TTGGGATCTCGACCTGGATGACATC
LOC_Os08g35670
Os.55050.1.S1_at--610--1891Chr08:22360135..22360159 (25 bp)
ACGTTAATGACTTCGCGTTCCTGGA
LOC_Os08g35670
Os.55050.1.S1_at--941--6931Chr08:22360092..22360116 (25 bp)
GTAGTCAGTAGTCATCTCATCGCAA
LOC_Os08g35670
Os.55050.1.S1_at--16--6551Chr08:22359962..22359986 (25 bp)
GATTTTTCCTCCGTTATCATGCCAG
LOC_Os08g35670
Target Sequence 
GTCGACGCCGGCACATCAGAGAAGAACGCGATAGTAGAAGCACCAAACAACCCCGCGCCATTAATGGTACTGGATCAGGT
TGCTGCTGATGCTGCAATGGATGTTCAAGAAGACATCATGTTCTCTTTGGAATCTCTTCTGGGGCCGGACTATGACCTGC
TACCTATGGAAGACGTTAGTGCTCCGGACACCGCTGCAGCCGGTGATGCAGCTGGTGGCTCACTGGACGGAGAGGAAGGC
GGCATGGACATTGGTTGGGATCTCGACCTGGATGACATCCTGGTGGAGAACGTTAATGACTTCGCGTTCCTGGACAACCT
TGCCGGGAGCGAGTAGTCAGTAGTCATCTCATCGCAAATATATTATCTCAAGTTAATTAAGCTAGAGATTAGAGAGAGGG
GATGTGTGCTCAGTATGATAAAACAACTTTTAGTCTTTGTTGCAAGTACTCTAAACATTGATGATTTTTCCTCCGTTATC
ATGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis