Browse Element(s) Details


OsAffx.6036.1.S1_at

Description tigr:9636.m03584
TID=OsAffx.6036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35620Os.17691.1.S1_at11/118+22313705..22317627RSH2, putative, expressed
LOC_Os08g35630Os.8851.1.S1_at11/118+22329557..22332044MTD1, putative, expressed
LOC_Os08g35640OsAffx.6036.1.S1_at11/118+22335917..22336445hypothetical protein
LOC_Os08g35650OsAffx.6037.1.S1_at11/118+22342214..22346327hypothetical protein
LOC_Os08g35660NANA8+22358234..22358878hypothetical protein
LOC_Os08g35670Os.55050.1.S1_at11/118+22359906..22364943Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6036.1.S1_at--221--4291Chr08:22336386..22336410 (25 bp)
CCTCCGTGTCATGCTTGTCGATGAT
LOC_Os08g35640
OsAffx.6036.1.S1_at--1059--9271Chr08:22336384..22336408 (25 bp)
TCCGTGTCATGCTTGTCGATGATGA
LOC_Os08g35640
OsAffx.6036.1.S1_at--285--9072Chr08:22336375..22336399 (25 bp)
TGCTTGTCGATGATGACATGAAGAC
LOC_Os08g35640
OsAffx.6036.1.S1_at--449--5671Chr08:22336259..22336385 (25 bp)
GACATGAAGACCGAGATGTTGTCAT
LOC_Os08g35640
OsAffx.6036.1.S1_at--405--1311Chr08:22336246..22336270 (25 bp)
AGATGTTGTCATTCTTCCCTGATGG
LOC_Os08g35640
OsAffx.6036.1.S1_at--528--731Chr08:22336244..22336268 (25 bp)
ATGTTGTCATTCTTCCCTGATGGCC
LOC_Os08g35640
OsAffx.6036.1.S1_at--673--112Chr08:22336236..22336260 (25 bp)
ATTCTTCCCTGATGGCCTCCATGTA
LOC_Os08g35640
OsAffx.6036.1.S1_at--492--6231Chr08:22336226..22336250 (25 bp)
GATGGCCTCCATGTAATTCTTGTTG
LOC_Os08g35640
OsAffx.6036.1.S1_at--23--8472Chr08:22336224..22336248 (25 bp)
TGGCCTCCATGTAATTCTTGTTGAT
LOC_Os08g35640
OsAffx.6036.1.S1_at--480--4472Chr08:22336222..22336246 (25 bp)
GCCTCCATGTAATTCTTGTTGATGA
LOC_Os08g35640
OsAffx.6036.1.S1_at--635--1451Chr08:22336192..22336216 (25 bp)
AGAAGGCCATGAGAACCGCAACCGC
LOC_Os08g35640
Target Sequence
CCTCCGTGTCATGCTTGTCGATGATGACATGAAGACCGAGATGTTGTCATTCTTCCCTGATGGCCTCCATGTAATTCTTG
TTGATGATGGCAAGAAGGCCATGAGAACCGCAACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis