Browse Element(s) Details


OsAffx.6037.1.S1_at

Description tigr:9636.m03585
TID=OsAffx.6037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3565011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35620Os.17691.1.S1_at11/118+22313705..22317627RSH2, putative, expressed
LOC_Os08g35630Os.8851.1.S1_at11/118+22329557..22332044MTD1, putative, expressed
LOC_Os08g35640OsAffx.6036.1.S1_at11/118+22335917..22336445hypothetical protein
LOC_Os08g35650OsAffx.6037.1.S1_at11/118+22342214..22346327hypothetical protein
LOC_Os08g35660NANA8+22358234..22358878hypothetical protein
LOC_Os08g35670Os.55050.1.S1_at11/118+22359906..22364943Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6037.1.S1_at--685--10251Chr08:22342744..22342768 (25 bp)
TTTGGGCTACCCGTGGATGACTTCC
LOC_Os08g35650
OsAffx.6037.1.S1_at--777--3771Chr08:22342720..22342744 (25 bp)
CTCGTTGGACAAACCGCATATGGCA
LOC_Os08g35650
OsAffx.6037.1.S1_at--264--751Chr08:22342645..22342669 (25 bp)
ATGTACGCCTACACAAGCGCACTGA
LOC_Os08g35650
OsAffx.6037.1.S1_at--883--811Chr08:22342594..22342618 (25 bp)
ATGGTGCCACCAATTGAGTCAACAT
LOC_Os08g35650
OsAffx.6037.1.S1_at--990--8891Chr08:22342580..22342604 (25 bp)
TGAGTCAACATTCACCATCATCGAT
LOC_Os08g35650
OsAffx.6037.1.S1_at--983--5851Chr08:22342544..22342568 (25 bp)
GACCAAGGGTGAGGGATCTGTCCCT
LOC_Os08g35650
OsAffx.6037.1.S1_at--1081--471Chr08:22342529..22342553 (25 bp)
ATCTGTCCCTGTTGTCGTTGTGTCA
LOC_Os08g35650
OsAffx.6037.1.S1_at--643--5051Chr08:22342483..22342507 (25 bp)
GCAGCAATTGAAGCAACAGCACCTA
LOC_Os08g35650
OsAffx.6037.1.S1_at--979--5471Chr08:22342450..22342474 (25 bp)
GAACTATTCATGATGCCTGAACAGG
LOC_Os08g35650
OsAffx.6037.1.S1_at--348--931Chr08:22342320..22342344 (25 bp)
AGGCAACTGACGACTCACTGAACAT
LOC_Os08g35650
OsAffx.6037.1.S1_at--715--5811Chr08:22342261..22342285 (25 bp)
GACCTGGACTACATCCTTATGAACA
LOC_Os08g35650
Target Sequence 
TTTGGGCTACCCGTGGATGACTTCCTCGTTGGACAAACCGCATATGGCAGTGCCGGACCATCCATAGGAGCCCCTGACGA
CAACGACGATGACGCCGCCATGTACGCCTACACAAGCGCACTGAACAACAATGCAGCTGTTGGTTCTCTCATGGTGCCAC
CAATTGAGTCAACATTCACCATCATCGATCCAATCGTTGGGACCAAGGGTGAGGGATCTGTCCCTGTTGTCGTTGTGTCA
GAGGATCAGAATAATGCGGTGGCAGCAATTGAAGCAACAGCACCTAACAACGCAGAACTATTCATGATGCCTGAACAGGT
TGCTGTTGATGCTCCGGTTGATGTTGAAGAAGGCATCATGTTCTCTCTGGAATCGCTCTTGGGGTTGGACGAGGACATGA
TACCTATGGAAGACGCTGGCGGTGAGGCAACTGACGACTCACTGAACATAAAGGAAGGTGGCATGGAGATCGGCTGGGAC
CTGGACCTGGACTACATCCTTATGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis