Browse Element(s) Details


OsAffx.29540.1.S1_at

Description tigr:9636.m03588
TID=OsAffx.29540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3568011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35660NANA8+22358234..22358878hypothetical protein
LOC_Os08g35670Os.55050.1.S1_at11/118+22359906..22364943Response regulator receiver domain containing protein, expressed
LOC_Os08g35680OsAffx.29540.1.S1_at11/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.8598.1.S1_at2/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.13875.1.S1_at1/118+22373653..22377974hypothetical protein
LOC_Os08g35690Os.47463.1.S1_x_at3/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35690Os.14491.2.S1_x_at2/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29540.1.S1_at--498--8431Chr08:22374193..22374217 (25 bp)
GGCCTTGCCACTGCAGATTGGGATA
LOC_Os08g35680
OsAffx.29540.1.S1_at--171--3691Chr08:22374146..22374170 (25 bp)
CTTTGATCGAGCTTCCATACGGTAT
LOC_Os08g35680
OsAffx.29540.1.S1_at--353--4611Chr08:22374039..22374063 (25 bp)
GCGTACCCCTACATAGATGCATTGA
LOC_Os08g35680
OsAffx.29540.1.S1_at--896--2231Chr08:22374014..22374038 (25 bp)
ACAATAACGTTGCAGCTGGCTCTCT
LOC_Os08g35680
OsAffx.29540.1.S1_at--518--2971Chr08:22373977..22374001 (25 bp)
AATGGAGCCAACGTTCAGCATCACC
LOC_Os08g35680
OsAffx.29540.1.S1_at--1014--5851Chr08:22373952..22373976 (25 bp)
GAGCCAACCGTGTTGACCCAGGGTG
LOC_Os08g35680
OsAffx.29540.1.S1_at--934--6991Chr08:22373894..22373918 (25 bp)
GTAACAACGCCGCACCATTAATGGT
LOC_Os08g35680
OsAffx.29540.1.S1_at--928--412Chr12:6914305..6914412 (25 bp)
ATCATGTTTTCACTGGAGTCTCTCC
NONE
OsAffx.29540.1.S1_at--1031--8111Chr08:22373791..22373815 (25 bp)
GGACTACGACATGCTGCCTATGGAA
LOC_Os08g35680
OsAffx.29540.1.S1_at--1138--8851Chr08:22373737..22373761 (25 bp)
TGATGATTCAGCTGGCATGGACATT
LOC_Os08g35680
OsAffx.29540.1.S1_at--1013--5831Chr08:22373706..22373730 (25 bp)
GACCTCGACCTGCATGATATCTTGG
LOC_Os08g35680
Target Sequence 
GGCCTTGCCACTGCAGATTGGGATAGCCATGGACAAAGGCAAGGCTCCTTTGATCGAGCTTCCATACGGTATACCCATGG
ATGACTTCCTCGTCGGACAAACTGCATATGGCGGTGCCGGACCATCCATCGAAGCCCCTGACGCCACCGCCGCTGCGTAC
CCCTACATAGATGCATTGAACAATAACGTTGCAGCTGGCTCTCTCATGGCGTCACCAATGGAGCCAACGTTCAGCATCAC
CGAGCCAACCGTGTTGACCCAGGGTGAGGGATCAGAGACGAATGCGGTAGCAACAACACGTAACAACGCCGCACCATTAA
TGGTACCTGATCAAGTTACTGCTGATGCTGCAATGGATGCTGAAGAAGACATCATGTTTTCACTGGAGTCTCTCCTTGGG
CTGGACTACGACATGCTGCCTATGGAAGACAGCAGCGCCGCCGAAGCCGCTGCCGCTGATGATTCAGCTGGCATGGACAT
TGGCTGGGACCTCGACCTGCATGATATCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis