Browse Element(s) Details


OsAffx.13875.1.S1_at

Description tigr:9632.m01757
TID=OsAffx.13875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1937010/11hypothetical protein
LOC_Os02g358492/11
LOC_Os11g230602/11retrotransposon, putative, centromere-specific
LOC_Os11g230702/11hypothetical protein
LOC_Os06g223501/11expressed protein
LOC_Os02g139201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g304191/11
LOC_Os08g356801/11hypothetical protein
LOC_Os06g226201/11hypothetical protein
LOC_Os05g409401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g19340NANA4+10733681..10737520retrotransposon protein, putative, unclassified
LOC_Os04g19350NANA4+10743789..10745370hypothetical protein
LOC_Os04g19360OsAffx.8201.1.S1_x_at2/114+10745799..10752555retrotransposon protein, putative, unclassified
LOC_Os04g19360OsAffx.22699.1.S1_x_at1/114+10745799..10752555retrotransposon protein, putative, unclassified
LOC_Os04g19370OsAffx.13875.1.S1_at10/114+10757570..10762020hypothetical protein
LOC_Os04g19380OsAffx.19542.3.S1_x_at2/114+10764224..10768325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g19390OsAffx.20729.1.S1_x_at1/114+10779053..10781615retrotransposon protein, putative, unclassified
LOC_Os04g19400NANA4+10784276..10786412retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13875.1.S1_at--969--711Chr04:10758428..10758452 (25 bp)
ATGATTTCCGTGTGGCTAGAACTGT
LOC_Os04g19370
OsAffx.13875.1.S1_at--439--19Chr12:26112428..26112920 (25 bp)
ATAGTTATTACCAGCCGTACTCATG
NONE
OsAffx.13875.1.S1_at--94--78316Chr12:26112944..26113020 (25 bp)
GGTACCCTGATTGTTTATTACTGCT
NONE
OsAffx.13875.1.S1_at--904--102112Chr12:26113011..26113207 (25 bp)
TATTACTGCTTTTATACCTCCCTAG
NONE
OsAffx.13875.1.S1_at--509--52732Chr12:26113211..26113309 (25 bp)
GAATGTATAGAAACTTCCGCCGTAT
NONE
OsAffx.13875.1.S1_at--431--2351Chr04:10759081..10759105 (25 bp)
AACTTCCGCCGTATATTAGATCTAC
LOC_Os04g19370
OsAffx.13875.1.S1_at--770--7931NONE
GGATTAACTATGACACCTCGCGAAG
NONE
OsAffx.13875.1.S1_at--513--5631Chr04:10761820..10761844 (25 bp)
GACACCTCGCGAAGTGACTTATGGG
LOC_Os04g19370
OsAffx.13875.1.S1_at--263--213Chr12:17338362..17338382 (21 bp)
ATTTGCTGGTGAATACCGCACCCAC
NONE
OsAffx.13875.1.S1_at--372--3931Chr04:10761914..10761938 (25 bp)
CGGCGCCGGAGTATGGGTCTTCCAT
LOC_Os04g19370
OsAffx.13875.1.S1_at--783--10111Chr04:10761925..10761949 (25 bp)
TATGGGTCTTCCATGATGCCATCAG
LOC_Os04g19370
Target Sequence 
ATGATTTCCGTGTGGCTAGAACTGTCTCGATCGATATAGTTATTACCAGCCGTACTCATGGAATTGAGTACCGGGACTCA
TATGGTACCCTGATTGTTTATTACTGCTTTTATACCTCCCTAGTCAGAATGTATAGAAACTTCCGCCGTATATTAGATCT
ACGTAGGATTAACTATGACACCTCGCGAAGTGACTTATGGGGGAAGACACTCTCAAAAGTGAAATTTGCTGGTGAATACC
GCACCCACCATGCACCCATGATGAGGAAGGCGGCGCCGGAGTATGGGTCTTCCATGATGCCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis